Variant report

Variant	nsv550128
Chromosome Location	chr10:19400845-19979434
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:19945416-19945759	HepG2	liver:	n/a	n/a
2	ARID3A	chr10:19674771-19675173	HepG2	liver:	n/a	n/a
3	ARID3A	chr10:19928010-19928135	HepG2	liver:	n/a	n/a
4	ARID3A	chr10:19603428-19603923	HepG2	liver:	n/a	n/a
5	ARID3A	chr10:19927475-19927788	HepG2	liver:	n/a	n/a
6	ATF1	chr10:19798150-19798313	K562	blood:	n/a	n/a
7	ATF1	chr10:19792017-19792188	K562	blood:	n/a	n/a
8	ATF2	chr10:19408000-19408486	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr10:19867582-19867705	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr10:19836112-19836113	K562	blood:	n/a	n/a
11	BACH1	chr10:19457572-19457738	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr10:19590996-19591316	H1-hESC	embryonic stem cell:	n/a	n/a
13	BACH1	chr10:19777970-19778068	H1-hESC	embryonic stem cell:	n/a	n/a
14	BACH1	chr10:19591069-19591317	K562	blood:	n/a	n/a
15	BACH1	chr10:19523717-19523813	H1-hESC	embryonic stem cell:	n/a	n/a
16	BATF	chr10:19807634-19807887	GM12878	blood:	n/a	chr10:19807691-19807699
17	BCL11A	chr10:19432092-19432361	GM12878	blood:	n/a	n/a
18	BCL11A	chr10:19431852-19432069	GM12878	blood:	n/a	n/a
19	BCL11A	chr10:19807647-19807851	GM12878	blood:	n/a	n/a
20	BHLHE40	chr10:19436379-19436415	GM12878	blood:	n/a	n/a
21	BHLHE40	chr10:19458718-19458920	HepG2	liver:	n/a	n/a
22	BRCA1	chr10:19884779-19884781	HepG2	liver:	n/a	n/a
23	BRCA1	chr10:19676411-19676542	Hela-S3	cervix:	n/a	n/a
24	CCNT2	chr10:19695758-19696077	K562	blood:	n/a	n/a
25	CEBPB	chr10:19787873-19788271	MCF-7	breast:	n/a	chr10:19788093-19788106 chr10:19788094-19788105 chr10:19788093-19788106 chr10:19788093-19788104 chr10:19788093-19788106
26	CEBPB	chr10:19621251-19621616	Hela-S3	cervix:	n/a	chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428
27	CEBPB	chr10:19936413-19936751	A549	lung:	n/a	chr10:19936565-19936576 chr10:19936564-19936575 chr10:19936566-19936575
28	CEBPB	chr10:19621307-19621498	HepG2	liver:	n/a	chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428
29	CEBPB	chr10:19593499-19593740	HepG2	liver:	n/a	n/a
30	CEBPB	chr10:19721050-19721310	IMR90	lung:	n/a	chr10:19721276-19721289 chr10:19721289-19721302 chr10:19721289-19721300 chr10:19721254-19721267 chr10:19721289-19721302
31	CEBPB	chr10:19455086-19455203	HepG2	liver:	n/a	chr10:19455162-19455173
32	CEBPB	chr10:19789951-19790296	MCF-7	breast:	n/a	n/a
33	CEBPB	chr10:19867958-19868244	A549	lung:	n/a	chr10:19868119-19868132 chr10:19868201-19868218 chr10:19868119-19868130
34	CEBPB	chr10:19406380-19406730	IMR90	lung:	n/a	chr10:19406538-19406549 chr10:19406537-19406550 chr10:19406537-19406550 chr10:19406539-19406548 chr10:19406539-19406548 chr10:19406539-19406548 chr10:19406537-19406550 chr10:19406539-19406548 chr10:19406537-19406548
35	CEBPB	chr10:19917809-19918057	IMR90	lung:	n/a	n/a
36	CEBPB	chr10:19617561-19617954	Hela-S3	cervix:	n/a	chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760
37	CEBPB	chr10:19940544-19940874	MCF-7	breast:	n/a	chr10:19940638-19940649
38	CEBPB	chr10:19867948-19868304	HepG2	liver:	n/a	chr10:19868119-19868132 chr10:19868201-19868218 chr10:19868119-19868130
39	CEBPB	chr10:19710723-19711033	HepG2	liver:	n/a	chr10:19710892-19710903
40	CEBPB	chr10:19918561-19918761	HepG2	liver:	n/a	chr10:19918689-19918700 chr10:19918691-19918702
41	CEBPB	chr10:19617562-19617902	MCF-7	breast:	n/a	chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760
42	CEBPB	chr10:19621293-19621574	ECC-1	luminal epithelium:	n/a	chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428
43	CEBPB	chr10:19589028-19589280	HepG2	liver:	n/a	n/a
44	CEBPB	chr10:19621245-19621611	IMR90	lung:	n/a	chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428
45	CEBPB	chr10:19927441-19927876	IMR90	lung:	n/a	chr10:19927714-19927725
46	CEBPB	chr10:19835153-19835497	Hela-S3	cervix:	n/a	chr10:19835318-19835331 chr10:19835318-19835329 chr10:19835320-19835331 chr10:19835318-19835331
47	CEBPB	chr10:19940438-19941029	IMR90	lung:	n/a	chr10:19940638-19940649
48	CEBPB	chr10:19737930-19737982	K562	blood:	n/a	chr10:19737941-19737954 chr10:19737943-19737952 chr10:19737943-19737954
49	CEBPB	chr10:19936293-19936803	MCF-7	breast:	n/a	chr10:19936565-19936576 chr10:19936564-19936575 chr10:19936566-19936575
50	CEBPB	chr10:19927484-19927912	MCF-7	breast:	n/a	chr10:19927714-19927725

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:19540759-19540809	HCT-116	colon:	n/a
2	chr10:19918310-19918360	NH-A	brain:	n/a
3	chr10:19918310-19918360	SAEC	small airway:	n/a
4	chr10:19946093-19946143	LNCaP	prostate:	n/a
5	chr10:19946093-19946143	AG04449	skin:	fetal
6	chr10:19540759-19540809	AG04450	lung:	fetal
7	chr10:19540759-19540809	AG09319	gingival:	n/a
8	chr10:19705290-19705340	K562	blood:	n/a
9	chr10:19408880-19408930	GM19239	blood:	n/a
10	chr10:19778008-19778058	HCM	heart:	n/a
11	chr10:19778008-19778058	ProgFib	skin:	n/a
12	chr10:19540759-19540809	MCF-7	breast:	n/a
13	chr10:19705290-19705340	HNPCEpiC	eye:	n/a
14	chr10:19972179-19972229	HPAEpiC	pulmonary alveolar:	n/a
15	chr10:19408880-19408930	IMR90	lung:	fetal
16	chr10:19778008-19778058	PANC-1	pancreas:	n/a
17	chr10:19408880-19408930	NH-A	brain:	n/a
18	chr10:19705290-19705340	HL-60	blood:	n/a
19	chr10:19408880-19408930	HCM	heart:	n/a
20	chr10:19540759-19540809	HAEpiC	amniotic membrane:	n/a
21	chr10:19778008-19778058	T-47D	breast:	n/a
22	chr10:19408880-19408930	HL-60	blood:	n/a
23	chr10:19946093-19946143	SK-N-MC	brain:	n/a
24	chr10:19408880-19408930	NHDF-neo	bronchial:	n/a
25	chr10:19540759-19540809	PFSK-1	brain:	n/a
26	chr10:19972179-19972229	CMK	blood:	n/a
27	chr10:19946093-19946143	PrEC	prostate:	n/a
28	chr10:19408880-19408930	HRPEpiC	eye:	n/a
29	chr10:19705290-19705340	ProgFib	skin:	n/a
30	chr10:19705290-19705340	GM12878	blood:	n/a
31	chr10:19918310-19918360	SK-N-SH	brain:	n/a
32	chr10:19946093-19946143	NH-A	brain:	n/a
33	chr10:19408880-19408930	AG09319	gingival:	n/a
34	chr10:19918310-19918360	LNCaP	prostate:	n/a
35	chr10:19946093-19946143	HNPCEpiC	eye:	n/a
36	chr10:19778008-19778058	IMR90	lung:	fetal
37	chr10:19778008-19778058	Jurkat	blood:	n/a
38	chr10:19408880-19408930	SK-N-SH_RA	brain:	n/a
39	chr10:19778008-19778058	SKMC	muscle:	n/a
40	chr10:19972179-19972229	AG09309	skin:	n/a
41	chr10:19540759-19540809	NHDF-neo	bronchial:	n/a
42	chr10:19778008-19778058	SK-N-SH	brain:	n/a
43	chr10:19705290-19705340	GM06990	blood:	n/a
44	chr10:19705290-19705340	HCT-116	colon:	n/a
45	chr10:19408880-19408930	GM12891	blood:	n/a
46	chr10:19408880-19408930	HCT-116	colon:	n/a
47	chr10:19705290-19705340	PrEC	prostate:	n/a
48	chr10:19408880-19408930	PrEC	prostate:	n/a
49	chr10:19946093-19946143	HPAEpiC	pulmonary alveolar:	n/a
50	chr10:19946093-19946143	AG10803	skin:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:19928272..19930845-chr10:19944987..19947653,2	K562	blood:
2	chr10:19704403..19706854-chr10:20104452..20106050,2	MCF-7	breast:
3	chr10:19701583..19703629-chr10:19722720..19725656,2	MCF-7	breast:
4	chr10:19781369..19782958-chr10:19786296..19789278,2	MCF-7	breast:
5	chr10:19590664..19593584-chr10:19602792..19604860,2	K562	blood:
6	chr10:19701065..19702056-chr10:20076746..20077511,2	MCF-7	breast:
7	chr10:19424011..19426061-chr10:19435541..19437655,2	K562	blood:
8	chr10:19590664..19593584-chr10:19602792..19604860,2	K562	blood:
9	chr10:19709784..19712687-chr10:19713625..19715285,2	K562	blood:
10	chr10:19598040..19600371-chr10:19601058..19603498,2	MCF-7	breast:
11	chr10:19466484..19467332-chr10:19521028..19521911,4	MCF-7	breast:
12	chr10:19551633..19554617-chr10:19556322..19558693,2	K562	blood:
13	chr10:19578194..19580695-chr10:19582089..19585004,2	K562	blood:
14	chr10:19466484..19467327-chr10:19521039..19521911,3	MCF-7	breast:
15	chr10:19928272..19930845-chr10:19944987..19947653,2	K562	blood:
16	chr10:19497233..19499735-chr10:19518305..19520335,2	MCF-7	breast:
17	chr10:19724105..19725802-chr10:19728835..19730495,2	K562	blood:
18	chr10:19701583..19703629-chr10:19722720..19725656,2	MCF-7	breast:
19	chr10:19419930..19422122-chr10:19424808..19427231,2	K562	blood:
20	chr10:19814024..19815559-chr10:19817040..19818969,2	K562	blood:
21	chr1:114251553..114252290-chr10:19972729..19973619,2	MCF-7	breast:
22	chr10:19943628..19945748-chr10:19960912..19962861,2	K562	blood:
23	chr10:19496117..19498249-chr10:19507924..19510695,2	MCF-7	breast:
24	chr10:19534164..19535892-chr10:19543312..19545061,2	MCF-7	breast:
25	chr10:19623502..19625941-chr10:19631040..19633191,2	K562	blood:
26	chr10:19806044..19808111-chr10:19811941..19813567,2	K562	blood:
27	chr10:19943628..19945748-chr10:19960912..19962861,2	K562	blood:
28	chr10:19399956..19400936-chr17:59652354..59652900,2	MCF-7	breast:
29	chr10:19784572..19786146-chr10:19787649..19789922,2	MCF-7	breast:
30	chr10:19814024..19815559-chr10:19817040..19818969,2	K562	blood:
31	chr10:19497233..19499735-chr10:19518305..19520335,2	MCF-7	breast:
32	chr10:19644040..19646101-chr10:19646355..19648931,2	MCF-7	breast:
33	chr10:19466484..19467327-chr10:19521039..19521911,3	MCF-7	breast:
34	chr10:19534164..19535892-chr10:19543312..19545061,2	MCF-7	breast:
35	chr10:19544299..19547180-chr10:19549327..19551757,2	MCF-7	breast:
36	chr10:19510172..19510750-chr10:19521065..19522003,2	MCF-7	breast:
37	chr10:19610336..19613284-chr14:35868183..35870740,2	MCF-7	breast:
38	chr10:19702800..19704977-chr10:19710060..19711569,2	MCF-7	breast:
39	chr10:19502635..19505234-chr10:19507325..19509106,2	MCF-7	breast:
40	chr10:19644040..19646101-chr10:19646355..19648931,2	MCF-7	breast:
41	chr10:19813535..19816224-chr10:19819107..19822084,2	MCF-7	breast:
42	chr10:19776078..19778713-chr10:19790449..19792992,2	K562	blood:
43	chr10:19598040..19600371-chr10:19601058..19603498,2	MCF-7	breast:
44	chr10:19806044..19808111-chr10:19811941..19813567,2	K562	blood:
45	chr10:19547526..19550166-chr10:19551019..19552884,2	MCF-7	breast:
46	chr10:19458075..19458575-chr18:36304626..36305400,2	MCF-7	breast:
47	chr10:19813535..19816224-chr10:19819107..19822084,2	MCF-7	breast:
48	chr10:19424011..19426061-chr10:19435541..19437655,2	K562	blood:
49	chr10:19785625..19787709-chr10:19788365..19791040,2	MCF-7	breast:
50	chr10:19874981..19877744-chr10:19939869..19941893,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NSUN6-6	chr10:19579152-19579395	XLOC_008744
2	lnc-PLXDC2-4	chr10:19887176-19887391	NONHSAT011663
3	lnc-PLXDC2-6	chr10:19778030-19778329	NONHSAT011661
4	lnc-NSUN6-6	chr10:19580351-19580409	XLOC_008744
5	lnc-NSUN6-7	chr10:19780001-19780228	NONHSAT011662

Variant related genes	Relation type
HMGN1P20	TF binding region
MALRD1	TF binding region
ENSG00000236960	TF binding region
RNA5SP303	TF binding region
ENSG00000227734	TF binding region
ENSG00000200545	TF binding region
HMGN1P20	CpG island
MALRD1	CpG island
ENSG00000236960	CpG island
RNA5SP303	CpG island
ENSG00000227734	CpG island
ENSG00000200545	CpG island
ENSG00000239539	chromatin interactions
ENSG00000120594	chromatin interactions
ENSG00000227734	chromatin interactions
ENSG00000204740	chromatin interactions
ENSG00000200545	chromatin interactions

Extended variants
information (count: 26393 )
Associated
traits (count: 47 )

Variant overlapped rSNPs/rCNVs (count:26393 , 50 per page) page: 1 2 3 4 5 6 7 ... 528

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2358315	chr10:19400845-19400846	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs151164524	chr10:19400892-19400893	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs547167645	chr10:19400894-19400895	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs186861100	chr10:19400922-19400923	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs111587948	chr10:19400944-19400945	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs539636934	chr10:19400982-19400983	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs191371222	chr10:19400997-19400998	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs554737483	chr10:19401003-19401004	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs115203794	chr10:19401009-19401010	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs537850975	chr10:19401016-19401017	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs574260860	chr10:19401035-19401036	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs183506134	chr10:19401052-19401053	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs556808113	chr10:19401053-19401054	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs537626777	chr10:19401079-19401080	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs5783654	chr10:19401080-19401081	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs397847193	chr10:19401098-19401099	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs575168139	chr10:19401119-19401120	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs542564678	chr10:19401154-19401155	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs140221706	chr10:19401176-19401177	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs572511599	chr10:19401204-19401205	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs189045593	chr10:19401212-19401213	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs146983504	chr10:19401267-19401268	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs372304836	chr10:19401277-19401278	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs138154404	chr10:19401281-19401282	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs375860248	chr10:19401301-19401302	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs542999237	chr10:19401307-19401308	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs561375689	chr10:19401337-19401338	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs142233171	chr10:19401379-19401380	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs547255581	chr10:19401408-19401409	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs376196333	chr10:19401444-19401445	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs192983899	chr10:19401456-19401457	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs532938856	chr10:19401468-19401469	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs551602286	chr10:19401483-19401484	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs185320538	chr10:19401484-19401485	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs538368376	chr10:19401493-19401494	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs545732755	chr10:19401494-19401495	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs568433848	chr10:19401500-19401501	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs199935343	chr10:19401514-19401515	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs368547213	chr10:19401527-19401528	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs554463293	chr10:19401534-19401535	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs189802223	chr10:19401553-19401554	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs374574312	chr10:19401556-19401557	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs572700743	chr10:19401608-19401609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs546077081	chr10:19401617-19401618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs558370736	chr10:19401665-19401666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs560278772	chr10:19401673-19401674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs576034902	chr10:19401693-19401694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs191767274	chr10:19401696-19401697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs146169212	chr10:19401704-19401705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs528819638	chr10:19401753-19401754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:47)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD
Cancer	20164919	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:1214 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19398800-19401000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr10:19398800-19403200	Weak transcription	Fetal Intestine Small	intestine
3	chr10:19399400-19403200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:19399600-19401200	Weak transcription	Fetal Intestine Large	intestine
5	chr10:19399800-19401000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr10:19400000-19401000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:19400200-19401000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:19400200-19401600	Enhancers	Brain Germinal Matrix	brain
9	chr10:19401200-19401600	Strong transcription	Fetal Intestine Large	intestine
10	chr10:19401600-19403200	Weak transcription	Fetal Intestine Large	intestine
11	chr10:19403200-19404000	Strong transcription	Duodenum Mucosa	Duodenum
12	chr10:19403200-19404400	Strong transcription	Fetal Intestine Small	intestine
13	chr10:19403200-19404800	Strong transcription	Fetal Intestine Large	intestine
14	chr10:19404000-19412800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:19404400-19411200	Weak transcription	Fetal Intestine Small	intestine
16	chr10:19404800-19410400	Weak transcription	Fetal Intestine Large	intestine
17	chr10:19407000-19408200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
18	chr10:19407200-19409000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr10:19407400-19409000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:19407400-19409400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:19407600-19407800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:19407600-19409000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:19407800-19408000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr10:19407800-19408000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr10:19407800-19409000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr10:19407800-19409000	Enhancers	H9 Cell Line	embryonic stem cell
27	chr10:19408000-19408200	Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr10:19408000-19408200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr10:19408000-19408400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr10:19408000-19408600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:19408200-19408600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr10:19408200-19409200	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr10:19408200-19409200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr10:19408600-19408800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr10:19408600-19409000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:19408600-19409200	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr10:19408800-19409200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr10:19409000-19409400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:19409200-19410400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:19410400-19413600	Strong transcription	Fetal Intestine Large	intestine
41	chr10:19410800-19411000	Enhancers	H9 Cell Line	embryonic stem cell
42	chr10:19410800-19411000	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr10:19411200-19413600	Strong transcription	Fetal Intestine Small	intestine
44	chr10:19412800-19413400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr10:19413400-19415800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr10:19413600-19417200	Weak transcription	Fetal Intestine Large	intestine
47	chr10:19413600-19424000	Weak transcription	Fetal Intestine Small	intestine
48	chr10:19414800-19434800	Weak transcription	Small Intestine	intestine
49	chr10:19415800-19419400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr10:19417200-19419400	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links