Variant report

Variant	nsv550228
Chromosome Location	chr10:26350843-26351844
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:59 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12774885	chr10:26350876-26350877	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs386742096	chr10:26350884-26350885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs12774892	chr10:26350886-26350887	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs12767568	chr10:26350907-26350908	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs558942101	chr10:26350970-26350971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs199786346	chr10:26350974-26350975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs575266386	chr10:26350988-26350989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs145181925	chr10:26351017-26351018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs181059651	chr10:26351022-26351023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs547191148	chr10:26351056-26351057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs567146232	chr10:26351062-26351063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs12767805	chr10:26351074-26351075	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs12775359	chr10:26351140-26351141	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs35171493	chr10:26351155-26351156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs34443692	chr10:26351168-26351169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs36067214	chr10:26351171-26351172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs528707015	chr10:26351187-26351188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs568109184	chr10:26351209-26351210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs35616188	chr10:26351220-26351221	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs185477461	chr10:26351232-26351233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs556741134	chr10:26351234-26351235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs530778809	chr10:26351246-26351247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs34726667	chr10:26351306-26351307	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs77173427	chr10:26351317-26351318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs79219565	chr10:26351318-26351319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs553232202	chr10:26351339-26351340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs372971108	chr10:26351340-26351341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs34610554	chr10:26351353-26351354	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs35853372	chr10:26351381-26351382	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs190919302	chr10:26351385-26351386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs575628465	chr10:26351408-26351409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs538168299	chr10:26351423-26351424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs554532159	chr10:26351424-26351425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs574388294	chr10:26351427-26351428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs73610386	chr10:26351440-26351441	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs368608731	chr10:26351450-26351451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs372411153	chr10:26351459-26351460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs573334201	chr10:26351461-26351462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs12768589	chr10:26351471-26351472	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs12768754	chr10:26351495-26351496	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs68140188	chr10:26351525-26351526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs375558768	chr10:26351526-26351527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs200243678	chr10:26351533-26351534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs12768930	chr10:26351576-26351577	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs188990074	chr10:26351583-26351584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs4998836	chr10:26351627-26351628	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs369068102	chr10:26351635-26351636	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs530088049	chr10:26351637-26351638	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs547027474	chr10:26351642-26351643	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs192044272	chr10:26351647-26351648	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21525872	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26344200-26355800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26351600-26352800	Enhancers	Pancreatic Islets	Pancreatic Islet

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