Variant report

Variant	nsv550417
Chromosome Location	chr10:37431253-37454376
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:37188694..37189693-chr10:37435453..37435966,2	MCF-7	breast:

Extended variants
information (count: 896 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:896 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559848008	chr10:37434621-37434622	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs528617060	chr10:37434656-37434657	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs376606454	chr10:37434664-37434665	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs207470807	chr10:37434680-37434681	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs548419055	chr10:37434696-37434697	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs547913764	chr10:37434707-37434708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs77293852	chr10:37434717-37434718	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs79404099	chr10:37434721-37434722	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs150715575	chr10:37434722-37434723	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs80218639	chr10:37434740-37434741	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs74773555	chr10:37434742-37434743	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs74535533	chr10:37434747-37434748	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs568625077	chr10:37434751-37434752	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs78073867	chr10:37434755-37434756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs77836096	chr10:37434756-37434757	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs77890855	chr10:37434800-37434801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs78591687	chr10:37434804-37434805	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs187683305	chr10:37434809-37434810	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs75055307	chr10:37434813-37434814	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs370143017	chr10:37434814-37434815	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs551256045	chr10:37434817-37434818	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs74392916	chr10:37434823-37434824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs77143875	chr10:37434890-37434891	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs570815556	chr10:37434891-37434892	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs79570721	chr10:37434898-37434899	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs79544159	chr10:37434909-37434910	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs75749506	chr10:37434918-37434919	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs76920590	chr10:37434921-37434922	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs539007244	chr10:37434935-37434936	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs79818095	chr10:37434938-37434939	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs79265153	chr10:37434945-37434946	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs77114632	chr10:37434951-37434952	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs76336998	chr10:37434953-37434954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs75873377	chr10:37434958-37434959	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs72787526	chr10:37434989-37434990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs552564777	chr10:37435003-37435004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs540412350	chr10:37435005-37435006	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs72787528	chr10:37435012-37435013	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs72787529	chr10:37435018-37435019	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs372748922	chr10:37435043-37435044	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs562376708	chr10:37435044-37435045	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs572576473	chr10:37435054-37435055	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs74794650	chr10:37435065-37435066	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs143003679	chr10:37435099-37435100	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs74605960	chr10:37435112-37435113	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs78086286	chr10:37435113-37435114	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs370276213	chr10:37435129-37435130	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs75280833	chr10:37435149-37435150	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs77932629	chr10:37435185-37435186	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs78659201	chr10:37435190-37435191	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Bethlem myopathy	20302629	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hepatocellular carcinoma	16785998	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37434600-37436000	Enhancers	A549	lung
2	chr10:37435200-37435600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
3	chr10:37435200-37435800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr10:37435200-37435800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr10:37435600-37436200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr10:37436000-37439000	Weak transcription	A549	lung
7	chr10:37439000-37439400	Active TSS	A549	lung
8	chr10:37439400-37441200	Weak transcription	A549	lung
9	chr10:37441200-37441400	Enhancers	A549	lung
10	chr10:37446400-37447200	Weak transcription	A549	lung
11	chr10:37447800-37448400	ZNF genes & repeats	A549	lung
12	chr10:37448400-37454800	Weak transcription	A549	lung

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