Variant report

Variant	nsv550427
Chromosome Location	chr10:38774877-38873777
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:12)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:147015520..147016167-chr10:38803805..38804327,2	MCF-7	breast:
2	chr10:38803800..38804326-chr2:89866708..89867711,3	MCF-7	breast:

(count:12 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEPT7L-5	chr10:38820298-38820420	l_293_chr10:38817176-38835580_testes
2	lnc-ZNF37A-15	chr10:38873700-38873834	NONHSAT012833
3	lnc-SEPT7L-5	chr10:38835500-38835580	l_293_chr10:38817176-38835580_testes
4	lnc-ZNF37A-15	chr10:38872127-38872203	NONHSAT012833
5	lnc-ZNF37A-13	chr10:38777965-38778040	NONHSAT012831
6	lnc-ZNF37A-13	chr10:38775347-38776224	NONHSAT012831
7	lnc-SEPT7L-4	chr10:38778660-38778807	NONHSAT012830
8	lnc-SEPT7L-5	chr10:38817177-38817484	l_293_chr10:38817176-38835580_testes
9	lnc-ZNF37A-14	chr10:38793579-38793636	NONHSAT012832
10	lnc-ZNF37A-14	chr10:38790522-38790674	NONHSAT012832
11	lnc-SEPT7L-5	chr10:38817492-38817571	l_293_chr10:38817176-38835580_testes
12	lnc-ZNF37A-13	chr10:38776591-38776657	NONHSAT012831

No data

Extended variants
information (count: 6402 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:6402 , 50 per page) page: 1 2 3 4 5 6 7 ... 129

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7085392	chr10:38774877-38774878	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs542838467	chr10:38774886-38774887	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112503882	chr10:38774909-38774910	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs575311200	chr10:38774910-38774911	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs397847589	chr10:38774911-38774912	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs200213716	chr10:38774920-38774921	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs544548855	chr10:38774941-38774942	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs564237068	chr10:38774945-38774946	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs185180647	chr10:38774960-38774961	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs540056429	chr10:38774961-38774962	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs141015240	chr10:38774980-38774981	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs528619535	chr10:38774997-38774998	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs76769486	chr10:38775027-38775028	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs78318318	chr10:38775041-38775042	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs111241680	chr10:38775045-38775046	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs148728394	chr10:38775055-38775056	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs149916285	chr10:38775059-38775060	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs373783668	chr10:38775088-38775089	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs191544130	chr10:38775098-38775099	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs568144629	chr10:38775118-38775119	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs530799073	chr10:38775162-38775163	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs562615739	chr10:38775177-38775178	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs114886206	chr10:38775189-38775190	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs571081241	chr10:38775204-38775205	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs540080592	chr10:38775211-38775212	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs7086074	chr10:38775214-38775215	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs561591460	chr10:38775227-38775228	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs535594551	chr10:38775250-38775251	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201282064	chr10:38775251-38775252	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs199832240	chr10:38775266-38775267	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs575373613	chr10:38775275-38775276	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs537859875	chr10:38775280-38775281	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs111771581	chr10:38775281-38775282	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs551274889	chr10:38775285-38775286	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs200725779	chr10:38775292-38775293	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs111654712	chr10:38775298-38775299	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs530510162	chr10:38775301-38775302	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs577868266	chr10:38775303-38775304	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs540510182	chr10:38775321-38775322	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs560135249	chr10:38775369-38775370	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs573478526	chr10:38775371-38775372	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs371424263	chr10:38775374-38775375	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs541955182	chr10:38775375-38775376	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs533179729	chr10:38775376-38775377	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs374517841	chr10:38775382-38775383	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs11011571	chr10:38775384-38775385	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs550703541	chr10:38775389-38775390	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs11011572	chr10:38775406-38775407	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs202042515	chr10:38775407-38775408	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs200040972	chr10:38775410-38775411	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Breast cancer	22522925	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:479 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38772400-38781000	ZNF genes & repeats	HUVEC	blood vessel
2	chr10:38772400-38781200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:38772400-38783000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
4	chr10:38772400-38783200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:38772400-38783400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:38772400-38783400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
7	chr10:38772400-38783400	ZNF genes & repeats	K562	blood
8	chr10:38772400-38785200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:38772400-38786000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:38772400-38787000	ZNF genes & repeats	Fetal Heart	heart
11	chr10:38772400-38796600	ZNF genes & repeats	Colon Smooth Muscle	Colon
12	chr10:38772400-38802400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:38772400-38802400	ZNF genes & repeats	Brain Angular Gyrus	brain
14	chr10:38772400-38818800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
15	chr10:38772400-38818800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:38772400-38818800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
17	chr10:38772400-38818800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr10:38772400-38818800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr10:38772400-38818800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
20	chr10:38772400-38818800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
21	chr10:38772400-38818800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
22	chr10:38772400-38818800	ZNF genes & repeats	Primary T cells from cord blood	blood
23	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
25	chr10:38772400-38818800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
26	chr10:38772400-38818800	ZNF genes & repeats	Brain Anterior Caudate	brain
27	chr10:38772400-38818800	ZNF genes & repeats	Brain Hippocampus Middle	brain
28	chr10:38772400-38818800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
29	chr10:38772400-38818800	ZNF genes & repeats	Brain Substantia Nigra	brain
30	chr10:38772400-38818800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
31	chr10:38772400-38818800	ZNF genes & repeats	Fetal Brain Male	brain
32	chr10:38772400-38818800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
33	chr10:38772400-38818800	ZNF genes & repeats	Fetal Lung	lung
34	chr10:38772400-38818800	ZNF genes & repeats	Gastric	stomach
35	chr10:38772400-38818800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
36	chr10:38772400-38818800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
37	chr10:38772400-38818800	ZNF genes & repeats	Dnd41	blood
38	chr10:38772400-38818800	ZNF genes & repeats	GM12878-XiMat	blood
39	chr10:38772400-38819000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:38772400-38819000	ZNF genes & repeats	Adipose Nuclei	Adipose
41	chr10:38772400-38819000	ZNF genes & repeats	Liver	Liver
42	chr10:38772400-38819000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
43	chr10:38772400-38819000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
44	chr10:38772600-38777000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
45	chr10:38772600-38777600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
46	chr10:38772600-38777800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
47	chr10:38772600-38781200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:38772600-38783200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
49	chr10:38772600-38783200	ZNF genes & repeats	Spleen	Spleen
50	chr10:38772600-38783600	ZNF genes & repeats	Colonic Mucosa	Colon

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