Variant report

Variant	nsv550436
Chromosome Location	chr10:38781038-38818700
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:147015520..147016167-chr10:38803805..38804327,2	MCF-7	breast:
2	chr10:38803800..38804326-chr2:89866708..89867711,3	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEPT7L-5	chr10:38817177-38817484	l_293_chr10:38817176-38835580_testes
2	lnc-SEPT7L-5	chr10:38817492-38817571	l_293_chr10:38817176-38835580_testes
3	lnc-ZNF37A-14	chr10:38793579-38793636	NONHSAT012832
4	lnc-ZNF37A-14	chr10:38790522-38790674	NONHSAT012832

No data

Extended variants
information (count: 4813 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:4813 , 50 per page) page: 1 2 3 4 5 6 7 ... 97

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs34264447	chr10:38781038-38781039	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs12776671	chr10:38781045-38781046	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs535983929	chr10:38781052-38781053	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs555586720	chr10:38781055-38781056	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs145763588	chr10:38781058-38781059	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs538262871	chr10:38781067-38781068	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs558147803	chr10:38781068-38781069	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs567999158	chr10:38781086-38781087	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs114963882	chr10:38781124-38781125	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs540926713	chr10:38781152-38781153	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs184052498	chr10:38781159-38781160	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs199583746	chr10:38781198-38781199	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs559075286	chr10:38781210-38781211	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs141194533	chr10:38781211-38781212	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs574164926	chr10:38781212-38781213	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs543160735	chr10:38781220-38781221	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs200907348	chr10:38781221-38781222	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562465501	chr10:38781223-38781224	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs572495123	chr10:38781225-38781226	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs535368098	chr10:38781233-38781234	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs186529911	chr10:38781249-38781250	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs553665530	chr10:38781250-38781251	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs376039125	chr10:38781263-38781264	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs12775405	chr10:38781266-38781267	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs61837061	chr10:38781267-38781268	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs564516414	chr10:38781269-38781270	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs527626117	chr10:38781272-38781273	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs547365796	chr10:38781274-38781275	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs567510134	chr10:38781279-38781280	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs529848386	chr10:38781280-38781281	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs561285918	chr10:38781288-38781289	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs201819894	chr10:38781294-38781295	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs200402434	chr10:38781297-38781298	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs549918030	chr10:38781298-38781299	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs80192675	chr10:38781299-38781300	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs530319474	chr10:38781300-38781301	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs555197998	chr10:38781315-38781316	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs141898667	chr10:38781329-38781330	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs202240436	chr10:38781332-38781333	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs200461147	chr10:38781339-38781340	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs144227132	chr10:38781340-38781341	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs7080742	chr10:38781354-38781355	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
43	rs199562665	chr10:38781380-38781381	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs190581406	chr10:38781390-38781391	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs111208384	chr10:38781394-38781395	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs376869557	chr10:38781395-38781396	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs369088088	chr10:38781397-38781398	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs373361044	chr10:38781399-38781400	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs111513050	chr10:38781408-38781409	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs554173204	chr10:38781418-38781419	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Breast cancer	22522925	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:297 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38772400-38781200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:38772400-38783000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
3	chr10:38772400-38783200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:38772400-38783400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:38772400-38783400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
6	chr10:38772400-38783400	ZNF genes & repeats	K562	blood
7	chr10:38772400-38785200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:38772400-38786000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:38772400-38787000	ZNF genes & repeats	Fetal Heart	heart
10	chr10:38772400-38796600	ZNF genes & repeats	Colon Smooth Muscle	Colon
11	chr10:38772400-38802400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:38772400-38802400	ZNF genes & repeats	Brain Angular Gyrus	brain
13	chr10:38772400-38818800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
14	chr10:38772400-38818800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:38772400-38818800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
16	chr10:38772400-38818800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr10:38772400-38818800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr10:38772400-38818800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
19	chr10:38772400-38818800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
20	chr10:38772400-38818800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr10:38772400-38818800	ZNF genes & repeats	Primary T cells from cord blood	blood
22	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr10:38772400-38818800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
25	chr10:38772400-38818800	ZNF genes & repeats	Brain Anterior Caudate	brain
26	chr10:38772400-38818800	ZNF genes & repeats	Brain Hippocampus Middle	brain
27	chr10:38772400-38818800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
28	chr10:38772400-38818800	ZNF genes & repeats	Brain Substantia Nigra	brain
29	chr10:38772400-38818800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
30	chr10:38772400-38818800	ZNF genes & repeats	Fetal Brain Male	brain
31	chr10:38772400-38818800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
32	chr10:38772400-38818800	ZNF genes & repeats	Fetal Lung	lung
33	chr10:38772400-38818800	ZNF genes & repeats	Gastric	stomach
34	chr10:38772400-38818800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
35	chr10:38772400-38818800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
36	chr10:38772400-38818800	ZNF genes & repeats	Dnd41	blood
37	chr10:38772400-38818800	ZNF genes & repeats	GM12878-XiMat	blood
38	chr10:38772400-38819000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:38772400-38819000	ZNF genes & repeats	Adipose Nuclei	Adipose
40	chr10:38772400-38819000	ZNF genes & repeats	Liver	Liver
41	chr10:38772400-38819000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
42	chr10:38772400-38819000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
43	chr10:38772600-38781200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:38772600-38783200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
45	chr10:38772600-38783200	ZNF genes & repeats	Spleen	Spleen
46	chr10:38772600-38783600	ZNF genes & repeats	Colonic Mucosa	Colon
47	chr10:38772600-38790400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
48	chr10:38772600-38790400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:38772600-38806600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
50	chr10:38772600-38818800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood

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