Variant report

Variant	nsv550437
Chromosome Location	chr10:38787591-38818700
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38803800..38804326-chr2:89866708..89867711,3	MCF-7	breast:
2	chr1:147015520..147016167-chr10:38803805..38804327,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEPT7L-5	chr10:38817492-38817571	l_293_chr10:38817176-38835580_testes
2	lnc-SEPT7L-5	chr10:38817177-38817484	l_293_chr10:38817176-38835580_testes
3	lnc-ZNF37A-14	chr10:38790522-38790674	NONHSAT012832
4	lnc-ZNF37A-14	chr10:38793579-38793636	NONHSAT012832

No data

Extended variants
information (count: 4122 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:4122 , 50 per page) page: 1 2 3 4 5 6 7 ... 83

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4934954	chr10:38787591-38787592	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs536405133	chr10:38787594-38787595	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs554165254	chr10:38787606-38787607	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs201694369	chr10:38787609-38787610	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs569613686	chr10:38787625-38787626	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs376005047	chr10:38787631-38787632	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs558244741	chr10:38787632-38787633	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549684586	chr10:38787634-38787635	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572351404	chr10:38787640-38787641	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs541322257	chr10:38787667-38787668	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs554862377	chr10:38787670-38787671	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs574687395	chr10:38787702-38787703	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs543607576	chr10:38787703-38787704	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs148514636	chr10:38787705-38787706	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs537836932	chr10:38787714-38787715	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs61243145	chr10:38787734-38787735	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs139836146	chr10:38787775-38787776	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs565127180	chr10:38787780-38787781	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs527641325	chr10:38787786-38787787	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs547689986	chr10:38787787-38787788	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs561221490	chr10:38787790-38787791	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs147941773	chr10:38787795-38787796	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs550089232	chr10:38787822-38787823	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs569759089	chr10:38787835-38787836	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs538351524	chr10:38787849-38787850	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs552190471	chr10:38787856-38787857	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs532106263	chr10:38787857-38787858	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs62642166	chr10:38787885-38787886	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs565687825	chr10:38787891-38787892	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs62642167	chr10:38787905-38787906	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs534552205	chr10:38787915-38787916	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs62642168	chr10:38787925-38787926	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs370347386	chr10:38787940-38787941	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs371886255	chr10:38787941-38787942	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs537280546	chr10:38787947-38787948	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs556875920	chr10:38787959-38787960	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs116796386	chr10:38787982-38787983	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs201677484	chr10:38787989-38787990	ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs111516849	chr10:38788005-38788006	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs201335608	chr10:38788006-38788007	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs145715281	chr10:38788035-38788036	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs201466651	chr10:38788037-38788038	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs141598297	chr10:38788050-38788051	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs545182436	chr10:38788055-38788056	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs373349572	chr10:38788069-38788070	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs376655086	chr10:38788084-38788085	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs576042605	chr10:38788086-38788087	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs541505377	chr10:38788093-38788094	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs112452161	chr10:38788121-38788122	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs368952985	chr10:38788141-38788142	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:255 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38772400-38796600	ZNF genes & repeats	Colon Smooth Muscle	Colon
2	chr10:38772400-38802400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:38772400-38802400	ZNF genes & repeats	Brain Angular Gyrus	brain
4	chr10:38772400-38818800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr10:38772400-38818800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:38772400-38818800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr10:38772400-38818800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr10:38772400-38818800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr10:38772400-38818800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
10	chr10:38772400-38818800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr10:38772400-38818800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr10:38772400-38818800	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr10:38772400-38818800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr10:38772400-38818800	ZNF genes & repeats	Brain Anterior Caudate	brain
17	chr10:38772400-38818800	ZNF genes & repeats	Brain Hippocampus Middle	brain
18	chr10:38772400-38818800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
19	chr10:38772400-38818800	ZNF genes & repeats	Brain Substantia Nigra	brain
20	chr10:38772400-38818800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr10:38772400-38818800	ZNF genes & repeats	Fetal Brain Male	brain
22	chr10:38772400-38818800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
23	chr10:38772400-38818800	ZNF genes & repeats	Fetal Lung	lung
24	chr10:38772400-38818800	ZNF genes & repeats	Gastric	stomach
25	chr10:38772400-38818800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
26	chr10:38772400-38818800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
27	chr10:38772400-38818800	ZNF genes & repeats	Dnd41	blood
28	chr10:38772400-38818800	ZNF genes & repeats	GM12878-XiMat	blood
29	chr10:38772400-38819000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:38772400-38819000	ZNF genes & repeats	Adipose Nuclei	Adipose
31	chr10:38772400-38819000	ZNF genes & repeats	Liver	Liver
32	chr10:38772400-38819000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
33	chr10:38772400-38819000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
34	chr10:38772600-38790400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
35	chr10:38772600-38790400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:38772600-38806600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
37	chr10:38772600-38818800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
38	chr10:38772600-38818800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
39	chr10:38772600-38818800	ZNF genes & repeats	Fetal Kidney	kidney
40	chr10:38772600-38818800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
41	chr10:38772800-38818800	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr10:38773000-38818800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
43	chr10:38773800-38818800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
44	chr10:38774800-38818800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:38781200-38814000	ZNF genes & repeats	HepG2	liver
46	chr10:38781800-38788400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
47	chr10:38782000-38790800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr10:38783400-38792400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
49	chr10:38784400-38802000	ZNF genes & repeats	Colonic Mucosa	Colon
50	chr10:38784600-38792600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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