Variant report

Variant	nsv550456
Chromosome Location	chr10:38799395-38873777
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:147015520..147016167-chr10:38803805..38804327,2	MCF-7	breast:
2	chr10:38803800..38804326-chr2:89866708..89867711,3	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-15	chr10:38873700-38873834	NONHSAT012833
2	lnc-SEPT7L-5	chr10:38817492-38817571	l_293_chr10:38817176-38835580_testes
3	lnc-SEPT7L-5	chr10:38820298-38820420	l_293_chr10:38817176-38835580_testes
4	lnc-SEPT7L-5	chr10:38835500-38835580	l_293_chr10:38817176-38835580_testes
5	lnc-SEPT7L-5	chr10:38817177-38817484	l_293_chr10:38817176-38835580_testes
6	lnc-ZNF37A-15	chr10:38872127-38872203	NONHSAT012833

No data

Extended variants
information (count: 3444 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:3444 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11815345	chr10:38799395-38799396	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs544386522	chr10:38799434-38799435	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs557220810	chr10:38799464-38799465	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs530834771	chr10:38799465-38799466	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs12416324	chr10:38799487-38799488	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs201600915	chr10:38799488-38799489	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs75919573	chr10:38799513-38799514	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs149806215	chr10:38799516-38799517	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs559799418	chr10:38799543-38799544	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs564453411	chr10:38799561-38799562	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs528464910	chr10:38799566-38799567	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs542184265	chr10:38799570-38799571	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs562387356	chr10:38799590-38799591	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs533570067	chr10:38799591-38799592	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs551160744	chr10:38799609-38799610	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs138174028	chr10:38799610-38799611	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs532881425	chr10:38799611-38799612	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs546263313	chr10:38799618-38799619	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs149228648	chr10:38799630-38799631	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs78653649	chr10:38799631-38799632	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs566159397	chr10:38799639-38799640	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs535067544	chr10:38799645-38799646	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs199910737	chr10:38799655-38799656	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs202186238	chr10:38799658-38799659	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs199801215	chr10:38799660-38799661	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs370917116	chr10:38799661-38799662	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs569129729	chr10:38799664-38799665	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201342850	chr10:38799683-38799684	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs202074298	chr10:38799685-38799686	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs537702135	chr10:38799688-38799689	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs11011594	chr10:38799693-38799694	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs557940388	chr10:38799715-38799716	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs577876102	chr10:38799725-38799726	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs111216989	chr10:38799740-38799741	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs546339627	chr10:38799750-38799751	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs202181376	chr10:38799760-38799761	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs200417586	chr10:38799761-38799762	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs570011769	chr10:38799762-38799763	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs376112605	chr10:38799767-38799768	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs7086744	chr10:38799781-38799782	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs201396166	chr10:38799786-38799787	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs573306112	chr10:38799831-38799832	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs542207108	chr10:38799849-38799850	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs561890273	chr10:38799885-38799886	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs575905990	chr10:38799888-38799889	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs61837084	chr10:38799891-38799892	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs61837085	chr10:38799896-38799897	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs138560811	chr10:38799909-38799910	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs567083021	chr10:38799910-38799911	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs189666384	chr10:38799914-38799915	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:312 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38772400-38802400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:38772400-38802400	ZNF genes & repeats	Brain Angular Gyrus	brain
3	chr10:38772400-38818800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:38772400-38818800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:38772400-38818800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr10:38772400-38818800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr10:38772400-38818800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr10:38772400-38818800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
9	chr10:38772400-38818800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
10	chr10:38772400-38818800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr10:38772400-38818800	ZNF genes & repeats	Primary T cells from cord blood	blood
12	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr10:38772400-38818800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
15	chr10:38772400-38818800	ZNF genes & repeats	Brain Anterior Caudate	brain
16	chr10:38772400-38818800	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr10:38772400-38818800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
18	chr10:38772400-38818800	ZNF genes & repeats	Brain Substantia Nigra	brain
19	chr10:38772400-38818800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr10:38772400-38818800	ZNF genes & repeats	Fetal Brain Male	brain
21	chr10:38772400-38818800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr10:38772400-38818800	ZNF genes & repeats	Fetal Lung	lung
23	chr10:38772400-38818800	ZNF genes & repeats	Gastric	stomach
24	chr10:38772400-38818800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
25	chr10:38772400-38818800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
26	chr10:38772400-38818800	ZNF genes & repeats	Dnd41	blood
27	chr10:38772400-38818800	ZNF genes & repeats	GM12878-XiMat	blood
28	chr10:38772400-38819000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:38772400-38819000	ZNF genes & repeats	Adipose Nuclei	Adipose
30	chr10:38772400-38819000	ZNF genes & repeats	Liver	Liver
31	chr10:38772400-38819000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
32	chr10:38772400-38819000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
33	chr10:38772600-38806600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
34	chr10:38772600-38818800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
35	chr10:38772600-38818800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
36	chr10:38772600-38818800	ZNF genes & repeats	Fetal Kidney	kidney
37	chr10:38772600-38818800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
38	chr10:38772800-38818800	ZNF genes & repeats	Primary B cells from cord blood	blood
39	chr10:38773000-38818800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
40	chr10:38773800-38818800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
41	chr10:38774800-38818800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:38781200-38814000	ZNF genes & repeats	HepG2	liver
43	chr10:38784400-38802000	ZNF genes & repeats	Colonic Mucosa	Colon
44	chr10:38784600-38804800	ZNF genes & repeats	K562	blood
45	chr10:38784600-38818800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
46	chr10:38784800-38809000	ZNF genes & repeats	HUVEC	blood vessel
47	chr10:38786200-38818800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
48	chr10:38786400-38809000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:38787800-38818800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:38787800-38818800	ZNF genes & repeats	Fetal Heart	heart

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