Variant report

Variant	nsv550470
Chromosome Location	chr10:38869176-38888335
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38875692..38876336-chr16:83942673..83943173,2	NB4	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-15	chr10:38873700-38873834	NONHSAT012833
2	lnc-ZNF37A-15	chr10:38872127-38872203	NONHSAT012833

Extended variants
information (count: 3086 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:3086 , 50 per page) page: 1 2 3 4 5 6 7 ... 62

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113642100	chr10:38869176-38869177	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs535485917	chr10:38869190-38869191	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs555718438	chr10:38869216-38869217	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs575889953	chr10:38869221-38869222	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs550022073	chr10:38869231-38869232	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs200745070	chr10:38869238-38869239	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs372058192	chr10:38869241-38869242	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs564579323	chr10:38869244-38869245	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs201498487	chr10:38869250-38869251	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs578225259	chr10:38869251-38869252	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs540799692	chr10:38869265-38869266	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs200315677	chr10:38869277-38869278	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs201359464	chr10:38869302-38869303	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs200982779	chr10:38869306-38869307	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs201288740	chr10:38869314-38869315	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs368918860	chr10:38869350-38869351	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs560315024	chr10:38869351-38869352	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs528979161	chr10:38869355-38869356	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs548742837	chr10:38869379-38869380	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs562499705	chr10:38869381-38869382	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs531160896	chr10:38869384-38869385	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs551663693	chr10:38869387-38869388	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs111208532	chr10:38869411-38869412	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs28887265	chr10:38869412-38869413	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs570209566	chr10:38869413-38869414	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs571173814	chr10:38869424-38869425	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs533759593	chr10:38869426-38869427	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs28861414	chr10:38869437-38869438	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs538891931	chr10:38869466-38869467	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201535915	chr10:38869477-38869478	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs566659286	chr10:38869482-38869483	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs373220028	chr10:38869484-38869485	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs530085702	chr10:38869488-38869489	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs535935930	chr10:38869502-38869503	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs75756075	chr10:38869509-38869510	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs200502053	chr10:38869514-38869515	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs539135319	chr10:38869517-38869518	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs376970797	chr10:38869518-38869519	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs148746776	chr10:38869522-38869523	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs555527427	chr10:38869538-38869539	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs71010437	chr10:38869543-38869544	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs61839109	chr10:38869544-38869545	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs190236103	chr10:38869549-38869550	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs371104835	chr10:38869552-38869553	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs569239776	chr10:38869555-38869556	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs537813947	chr10:38869560-38869561	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs74217398	chr10:38869562-38869563	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs374171769	chr10:38869567-38869568	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs368394858	chr10:38869569-38869570	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs572361516	chr10:38869578-38869579	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:224 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38868800-38883800	ZNF genes & repeats	Gastric	stomach
2	chr10:38868800-38884200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr10:38868800-38888600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:38868800-38888800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:38868800-38888800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr10:38868800-38888800	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:38868800-38888800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:38868800-38888800	ZNF genes & repeats	Brain Substantia Nigra	brain
9	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr10:38868800-38888800	ZNF genes & repeats	Fetal Lung	lung
12	chr10:38868800-38888800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr10:38868800-38889000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:38868800-38889000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr10:38869000-38869400	ZNF genes & repeats	Esophagus	oesophagus
16	chr10:38869000-38869400	ZNF genes & repeats	Pancreas	Pancrea
17	chr10:38869000-38869400	ZNF genes & repeats	Stomach Mucosa	stomach
18	chr10:38869000-38869400	Active TSS	NHDF-Ad	bronchial
19	chr10:38869000-38870200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:38869000-38870800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:38869000-38872600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
22	chr10:38869000-38872600	ZNF genes & repeats	Fetal Heart	heart
23	chr10:38869000-38872600	ZNF genes & repeats	A549	lung
24	chr10:38869000-38874200	ZNF genes & repeats	HMEC	breast
25	chr10:38869000-38874600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:38869000-38874600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:38869000-38874600	ZNF genes & repeats	Spleen	Spleen
28	chr10:38869000-38874800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
29	chr10:38869000-38874800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:38869000-38875000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
31	chr10:38869000-38875000	ZNF genes & repeats	Colonic Mucosa	Colon
32	chr10:38869000-38875000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr10:38869000-38875200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
34	chr10:38869000-38875200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
35	chr10:38869000-38875400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
36	chr10:38869000-38875600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:38869000-38875800	ZNF genes & repeats	Colon Smooth Muscle	Colon
38	chr10:38869000-38876000	ZNF genes & repeats	Brain Hippocampus Middle	brain
39	chr10:38869000-38878600	ZNF genes & repeats	Brain Angular Gyrus	brain
40	chr10:38869000-38878800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
41	chr10:38869000-38882400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
42	chr10:38869000-38882400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
43	chr10:38869000-38882400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
44	chr10:38869000-38882400	ZNF genes & repeats	K562	blood
45	chr10:38869000-38882800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
46	chr10:38869000-38883600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
47	chr10:38869000-38883600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
48	chr10:38869000-38883800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:38869000-38884600	ZNF genes & repeats	Brain Anterior Caudate	brain
50	chr10:38869000-38885000	ZNF genes & repeats	GM12878-XiMat	blood

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