Variant report

Variant	nsv550488
Chromosome Location	chr10:38869738-38881731
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38875692..38876336-chr16:83942673..83943173,2	NB4	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-15	chr10:38872127-38872203	NONHSAT012833
2	lnc-ZNF37A-15	chr10:38873700-38873834	NONHSAT012833

Extended variants
information (count: 1953 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:1953 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74686874	chr10:38869738-38869739	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs547849541	chr10:38869754-38869755	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs569221276	chr10:38869755-38869756	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs369771286	chr10:38869758-38869759	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs61839110	chr10:38869761-38869762	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs374003853	chr10:38869762-38869763	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs375705028	chr10:38869763-38869764	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs61839111	chr10:38869764-38869765	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs538262481	chr10:38869765-38869766	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs61839112	chr10:38869766-38869767	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs371475914	chr10:38869767-38869768	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs12779272	chr10:38869775-38869776	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs61839113	chr10:38869779-38869780	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs536152455	chr10:38869781-38869782	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs12779278	chr10:38869789-38869790	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs374037588	chr10:38869796-38869797	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs61839114	chr10:38869797-38869798	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs12780715	chr10:38869806-38869807	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs12777958	chr10:38869810-38869811	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs112171885	chr10:38869811-38869812	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs112956362	chr10:38869814-38869815	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs367670072	chr10:38869816-38869817	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs371547341	chr10:38869819-38869820	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs376673828	chr10:38869821-38869822	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs370001922	chr10:38869826-38869827	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs372844029	chr10:38869828-38869829	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs201318790	chr10:38869829-38869830	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201931048	chr10:38869831-38869832	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs200592500	chr10:38869832-38869833	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs373265330	chr10:38869843-38869844	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs71010438	chr10:38869845-38869846	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs201497260	chr10:38869846-38869847	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs199617558	chr10:38869847-38869848	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs376944739	chr10:38869856-38869857	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs368798907	chr10:38869859-38869860	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs558166074	chr10:38869860-38869861	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs372685511	chr10:38869861-38869862	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs572008433	chr10:38869877-38869878	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs534490819	chr10:38869885-38869886	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs554458722	chr10:38869889-38869890	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs574186008	chr10:38869890-38869891	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs542818510	chr10:38869891-38869892	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs150455867	chr10:38869897-38869898	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs200512923	chr10:38869917-38869918	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs576034871	chr10:38869936-38869937	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs544581674	chr10:38869937-38869938	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs540741503	chr10:38869946-38869947	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs201284501	chr10:38869975-38869976	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs545023786	chr10:38869981-38869982	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs564530768	chr10:38869982-38869983	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:196 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38868800-38883800	ZNF genes & repeats	Gastric	stomach
2	chr10:38868800-38884200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr10:38868800-38888600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:38868800-38888800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:38868800-38888800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr10:38868800-38888800	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:38868800-38888800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:38868800-38888800	ZNF genes & repeats	Brain Substantia Nigra	brain
9	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr10:38868800-38888800	ZNF genes & repeats	Fetal Lung	lung
12	chr10:38868800-38888800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr10:38868800-38889000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:38868800-38889000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr10:38869000-38870200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:38869000-38870800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:38869000-38872600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
18	chr10:38869000-38872600	ZNF genes & repeats	Fetal Heart	heart
19	chr10:38869000-38872600	ZNF genes & repeats	A549	lung
20	chr10:38869000-38874200	ZNF genes & repeats	HMEC	breast
21	chr10:38869000-38874600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:38869000-38874600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:38869000-38874600	ZNF genes & repeats	Spleen	Spleen
24	chr10:38869000-38874800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
25	chr10:38869000-38874800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:38869000-38875000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
27	chr10:38869000-38875000	ZNF genes & repeats	Colonic Mucosa	Colon
28	chr10:38869000-38875000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
29	chr10:38869000-38875200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
30	chr10:38869000-38875200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
31	chr10:38869000-38875400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
32	chr10:38869000-38875600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:38869000-38875800	ZNF genes & repeats	Colon Smooth Muscle	Colon
34	chr10:38869000-38876000	ZNF genes & repeats	Brain Hippocampus Middle	brain
35	chr10:38869000-38878600	ZNF genes & repeats	Brain Angular Gyrus	brain
36	chr10:38869000-38878800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr10:38869000-38882400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
38	chr10:38869000-38882400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
39	chr10:38869000-38882400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
40	chr10:38869000-38882400	ZNF genes & repeats	K562	blood
41	chr10:38869000-38882800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
42	chr10:38869000-38883600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
43	chr10:38869000-38883600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:38869000-38883800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:38869000-38884600	ZNF genes & repeats	Brain Anterior Caudate	brain
46	chr10:38869000-38885000	ZNF genes & repeats	GM12878-XiMat	blood
47	chr10:38869000-38885200	ZNF genes & repeats	Fetal Kidney	kidney
48	chr10:38869000-38887200	ZNF genes & repeats	Dnd41	blood
49	chr10:38869000-38888200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:38869000-38888600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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