Variant report

Variant	nsv550490
Chromosome Location	chr10:38870218-38875947
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38875692..38876336-chr16:83942673..83943173,2	NB4	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-15	chr10:38873700-38873834	NONHSAT012833
2	lnc-ZNF37A-15	chr10:38872127-38872203	NONHSAT012833

Extended variants
information (count: 893 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:893 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111208534	chr10:38870220-38870221	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs549737314	chr10:38870221-38870222	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs551814672	chr10:38870226-38870227	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs55727926	chr10:38870239-38870240	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs371041218	chr10:38870240-38870241	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs111208535	chr10:38870245-38870246	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs111208536	chr10:38870261-38870262	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs543467746	chr10:38870265-38870266	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs563244428	chr10:38870266-38870267	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs111208537	chr10:38870290-38870291	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs532283081	chr10:38870298-38870299	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs12573262	chr10:38870340-38870341	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs565514070	chr10:38870356-38870357	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs527969069	chr10:38870359-38870360	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs368440639	chr10:38870379-38870380	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs368114179	chr10:38870381-38870382	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs372450062	chr10:38870386-38870387	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs375712283	chr10:38870388-38870389	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs548131409	chr10:38870400-38870401	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs111208538	chr10:38870411-38870412	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs201729131	chr10:38870417-38870418	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs111136300	chr10:38870420-38870421	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs536259678	chr10:38870428-38870429	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs550201268	chr10:38870429-38870430	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs370349235	chr10:38870438-38870439	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs201102204	chr10:38870452-38870453	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs74194166	chr10:38870469-38870470	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs570048401	chr10:38870470-38870471	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs202197337	chr10:38870484-38870485	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs563270102	chr10:38870485-38870486	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs558312119	chr10:38870496-38870497	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs200242378	chr10:38870501-38870502	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs185743129	chr10:38870504-38870505	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571935189	chr10:38870510-38870511	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs577111570	chr10:38870519-38870520	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs546062915	chr10:38870522-38870523	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs202102687	chr10:38870538-38870539	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs574331164	chr10:38870549-38870550	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs200285108	chr10:38870556-38870557	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs543049509	chr10:38870558-38870559	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs199651093	chr10:38870559-38870560	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs12571158	chr10:38870565-38870566	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs576999037	chr10:38870566-38870567	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs545944058	chr10:38870601-38870602	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs12573289	chr10:38870643-38870644	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs181655856	chr10:38870644-38870645	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs527904163	chr10:38870659-38870660	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs548068999	chr10:38870685-38870686	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs200367095	chr10:38870690-38870691	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs370886022	chr10:38870696-38870697	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38868800-38883800	ZNF genes & repeats	Gastric	stomach
2	chr10:38868800-38884200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr10:38868800-38888600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:38868800-38888800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:38868800-38888800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr10:38868800-38888800	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:38868800-38888800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:38868800-38888800	ZNF genes & repeats	Brain Substantia Nigra	brain
9	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr10:38868800-38888800	ZNF genes & repeats	Fetal Lung	lung
12	chr10:38868800-38888800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr10:38868800-38889000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:38868800-38889000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr10:38869000-38870800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:38869000-38872600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
17	chr10:38869000-38872600	ZNF genes & repeats	Fetal Heart	heart
18	chr10:38869000-38872600	ZNF genes & repeats	A549	lung
19	chr10:38869000-38874200	ZNF genes & repeats	HMEC	breast
20	chr10:38869000-38874600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:38869000-38874600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:38869000-38874600	ZNF genes & repeats	Spleen	Spleen
23	chr10:38869000-38874800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
24	chr10:38869000-38874800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:38869000-38875000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
26	chr10:38869000-38875000	ZNF genes & repeats	Colonic Mucosa	Colon
27	chr10:38869000-38875000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
28	chr10:38869000-38875200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
29	chr10:38869000-38875200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
30	chr10:38869000-38875400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
31	chr10:38869000-38875600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:38869000-38875800	ZNF genes & repeats	Colon Smooth Muscle	Colon
33	chr10:38869000-38876000	ZNF genes & repeats	Brain Hippocampus Middle	brain
34	chr10:38869000-38878600	ZNF genes & repeats	Brain Angular Gyrus	brain
35	chr10:38869000-38878800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr10:38869000-38882400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
37	chr10:38869000-38882400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
38	chr10:38869000-38882400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
39	chr10:38869000-38882400	ZNF genes & repeats	K562	blood
40	chr10:38869000-38882800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
41	chr10:38869000-38883600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
42	chr10:38869000-38883600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:38869000-38883800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:38869000-38884600	ZNF genes & repeats	Brain Anterior Caudate	brain
45	chr10:38869000-38885000	ZNF genes & repeats	GM12878-XiMat	blood
46	chr10:38869000-38885200	ZNF genes & repeats	Fetal Kidney	kidney
47	chr10:38869000-38887200	ZNF genes & repeats	Dnd41	blood
48	chr10:38869000-38888200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:38869000-38888600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:38869000-38888600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links