Variant report

Variant	nsv550509
Chromosome Location	chr10:38871396-38886805
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38875692..38876336-chr16:83942673..83943173,2	NB4	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-15	chr10:38873700-38873834	NONHSAT012833
2	lnc-ZNF37A-15	chr10:38872127-38872203	NONHSAT012833

Extended variants
information (count: 2564 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:2564 , 50 per page) page: 1 2 3 4 5 6 7 ... 52

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7080322	chr10:38871396-38871397	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs528557767	chr10:38871400-38871401	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376539282	chr10:38871401-38871402	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs111208549	chr10:38871402-38871403	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs561698746	chr10:38871406-38871407	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs530742050	chr10:38871408-38871409	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs111217662	chr10:38871410-38871411	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs200787482	chr10:38871412-38871413	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs201808336	chr10:38871414-38871415	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550555199	chr10:38871415-38871416	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs570755384	chr10:38871431-38871432	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs539782779	chr10:38871460-38871461	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs373382906	chr10:38871461-38871462	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs546601546	chr10:38871483-38871484	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs566500199	chr10:38871486-38871487	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs535171305	chr10:38871487-38871488	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs554994228	chr10:38871488-38871489	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs142647332	chr10:38871505-38871506	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs141471261	chr10:38871519-38871520	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs111208550	chr10:38871536-38871537	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs537651245	chr10:38871544-38871545	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs557175060	chr10:38871551-38871552	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs141056174	chr10:38871553-38871554	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs372936544	chr10:38871560-38871561	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs577108364	chr10:38871576-38871577	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs546118784	chr10:38871597-38871598	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs111217704	chr10:38871604-38871605	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs559295546	chr10:38871624-38871625	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs573205724	chr10:38871641-38871642	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs541918228	chr10:38871645-38871646	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs562214957	chr10:38871654-38871655	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs200653732	chr10:38871662-38871663	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs530954917	chr10:38871665-38871666	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs368073569	chr10:38871674-38871675	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs550785022	chr10:38871675-38871676	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs201814125	chr10:38871681-38871682	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs564306928	chr10:38871684-38871685	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs533241236	chr10:38871704-38871705	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs372000108	chr10:38871705-38871706	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs111208551	chr10:38871714-38871715	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs546936175	chr10:38871715-38871716	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs566308453	chr10:38871727-38871728	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs535438541	chr10:38871734-38871735	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs548753397	chr10:38871740-38871741	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs62640832	chr10:38871741-38871742	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs543228887	chr10:38871745-38871746	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs376680881	chr10:38871759-38871760	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs568927289	chr10:38871775-38871776	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs537581033	chr10:38871818-38871819	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs187332830	chr10:38871823-38871824	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:213 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38868800-38883800	ZNF genes & repeats	Gastric	stomach
2	chr10:38868800-38884200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr10:38868800-38888600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:38868800-38888800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:38868800-38888800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr10:38868800-38888800	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:38868800-38888800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:38868800-38888800	ZNF genes & repeats	Brain Substantia Nigra	brain
9	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr10:38868800-38888800	ZNF genes & repeats	Fetal Lung	lung
12	chr10:38868800-38888800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr10:38868800-38889000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:38868800-38889000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr10:38869000-38872600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
16	chr10:38869000-38872600	ZNF genes & repeats	Fetal Heart	heart
17	chr10:38869000-38872600	ZNF genes & repeats	A549	lung
18	chr10:38869000-38874200	ZNF genes & repeats	HMEC	breast
19	chr10:38869000-38874600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:38869000-38874600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:38869000-38874600	ZNF genes & repeats	Spleen	Spleen
22	chr10:38869000-38874800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
23	chr10:38869000-38874800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:38869000-38875000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
25	chr10:38869000-38875000	ZNF genes & repeats	Colonic Mucosa	Colon
26	chr10:38869000-38875000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
27	chr10:38869000-38875200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
28	chr10:38869000-38875200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
29	chr10:38869000-38875400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
30	chr10:38869000-38875600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:38869000-38875800	ZNF genes & repeats	Colon Smooth Muscle	Colon
32	chr10:38869000-38876000	ZNF genes & repeats	Brain Hippocampus Middle	brain
33	chr10:38869000-38878600	ZNF genes & repeats	Brain Angular Gyrus	brain
34	chr10:38869000-38878800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr10:38869000-38882400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
36	chr10:38869000-38882400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
37	chr10:38869000-38882400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
38	chr10:38869000-38882400	ZNF genes & repeats	K562	blood
39	chr10:38869000-38882800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
40	chr10:38869000-38883600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
41	chr10:38869000-38883600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:38869000-38883800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:38869000-38884600	ZNF genes & repeats	Brain Anterior Caudate	brain
44	chr10:38869000-38885000	ZNF genes & repeats	GM12878-XiMat	blood
45	chr10:38869000-38885200	ZNF genes & repeats	Fetal Kidney	kidney
46	chr10:38869000-38887200	ZNF genes & repeats	Dnd41	blood
47	chr10:38869000-38888200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:38869000-38888600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr10:38869000-38888600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:38869000-38888600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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