Variant report

Variant	nsv550518
Chromosome Location	chr10:38874285-38888745
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38875692..38876336-chr16:83942673..83943173,2	NB4	blood:

Extended variants
information (count: 2411 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:2411 , 50 per page) page: 1 2 3 4 5 6 7 ... 49

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11146879	chr10:38874285-38874286	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs533231425	chr10:38874289-38874290	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs540177484	chr10:38874292-38874293	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs560058189	chr10:38874307-38874308	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs62649597	chr10:38874314-38874315	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs528887041	chr10:38874320-38874321	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs548618047	chr10:38874350-38874351	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs143978007	chr10:38874364-38874365	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs77508786	chr10:38874372-38874373	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs77763218	chr10:38874373-38874374	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs568605810	chr10:38874379-38874380	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs201014949	chr10:38874385-38874386	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs373716304	chr10:38874400-38874401	ZNF genes & repeats Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs531342363	chr10:38874413-38874414	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs140548294	chr10:38874423-38874424	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs550740912	chr10:38874424-38874425	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs570978815	chr10:38874427-38874428	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs200039996	chr10:38874432-38874433	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs540092699	chr10:38874445-38874446	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs546988315	chr10:38874450-38874451	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs566810256	chr10:38874455-38874456	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs76418437	chr10:38874464-38874465	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs535477397	chr10:38874465-38874466	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs79977791	chr10:38874469-38874470	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs555838529	chr10:38874471-38874472	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs75892402	chr10:38874472-38874473	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs77087118	chr10:38874475-38874476	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs146539366	chr10:38874477-38874478	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs79382855	chr10:38874482-38874483	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs575793124	chr10:38874483-38874484	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs111338617	chr10:38874484-38874485	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs79099555	chr10:38874489-38874490	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs201951220	chr10:38874490-38874491	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs77221307	chr10:38874491-38874492	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs76960509	chr10:38874493-38874494	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs76617529	chr10:38874494-38874495	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs78954378	chr10:38874495-38874496	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs557953325	chr10:38874498-38874499	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201498789	chr10:38874501-38874502	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs10870451	chr10:38874509-38874510	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs12775424	chr10:38874534-38874535	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs62640624	chr10:38874535-38874536	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs62640625	chr10:38874538-38874539	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs560185887	chr10:38874539-38874540	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs62640626	chr10:38874542-38874543	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs62640627	chr10:38874552-38874553	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs150450369	chr10:38874574-38874575	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs573921304	chr10:38874580-38874581	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs372152405	chr10:38874592-38874593	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs542202295	chr10:38874594-38874595	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:178 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38868800-38883800	ZNF genes & repeats	Gastric	stomach
2	chr10:38868800-38884200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr10:38868800-38888600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:38868800-38888800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:38868800-38888800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr10:38868800-38888800	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:38868800-38888800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:38868800-38888800	ZNF genes & repeats	Brain Substantia Nigra	brain
9	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr10:38868800-38888800	ZNF genes & repeats	Fetal Lung	lung
12	chr10:38868800-38888800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr10:38868800-38889000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:38868800-38889000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr10:38869000-38874600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:38869000-38874600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:38869000-38874600	ZNF genes & repeats	Spleen	Spleen
18	chr10:38869000-38874800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
19	chr10:38869000-38874800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:38869000-38875000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
21	chr10:38869000-38875000	ZNF genes & repeats	Colonic Mucosa	Colon
22	chr10:38869000-38875000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
23	chr10:38869000-38875200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
24	chr10:38869000-38875200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
25	chr10:38869000-38875400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
26	chr10:38869000-38875600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:38869000-38875800	ZNF genes & repeats	Colon Smooth Muscle	Colon
28	chr10:38869000-38876000	ZNF genes & repeats	Brain Hippocampus Middle	brain
29	chr10:38869000-38878600	ZNF genes & repeats	Brain Angular Gyrus	brain
30	chr10:38869000-38878800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
31	chr10:38869000-38882400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
32	chr10:38869000-38882400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
33	chr10:38869000-38882400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
34	chr10:38869000-38882400	ZNF genes & repeats	K562	blood
35	chr10:38869000-38882800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
36	chr10:38869000-38883600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
37	chr10:38869000-38883600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
38	chr10:38869000-38883800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:38869000-38884600	ZNF genes & repeats	Brain Anterior Caudate	brain
40	chr10:38869000-38885000	ZNF genes & repeats	GM12878-XiMat	blood
41	chr10:38869000-38885200	ZNF genes & repeats	Fetal Kidney	kidney
42	chr10:38869000-38887200	ZNF genes & repeats	Dnd41	blood
43	chr10:38869000-38888200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:38869000-38888600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:38869000-38888600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:38869000-38888600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
47	chr10:38869000-38888800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
48	chr10:38869000-38888800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
49	chr10:38869000-38888800	ZNF genes & repeats	Liver	Liver
50	chr10:38869000-38888800	ZNF genes & repeats	Fetal Brain Male	brain

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