Variant report

Variant	nsv550524
Chromosome Location	chr10:38874654-38887589
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38875692..38876336-chr16:83942673..83943173,2	NB4	blood:

Extended variants
information (count: 2189 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:2189 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4070544	chr10:38874654-38874655	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs149003179	chr10:38874667-38874668	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs75200354	chr10:38874668-38874669	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs377330929	chr10:38874669-38874670	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs370431782	chr10:38874674-38874675	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs547217160	chr10:38874680-38874681	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs376100156	chr10:38874686-38874687	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs567043222	chr10:38874690-38874691	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs377541238	chr10:38874704-38874705	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs536187380	chr10:38874706-38874707	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs370751947	chr10:38874707-38874708	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs375050373	chr10:38874708-38874709	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs144550708	chr10:38874709-38874710	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs77486971	chr10:38874713-38874714	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs146718611	chr10:38874715-38874716	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs549373099	chr10:38874720-38874721	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs148180834	chr10:38874722-38874723	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs569292972	chr10:38874728-38874729	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs368426601	chr10:38874733-38874734	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs371485391	chr10:38874737-38874738	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs142944407	chr10:38874740-38874741	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112578428	chr10:38874744-38874745	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs538305780	chr10:38874748-38874749	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs557978198	chr10:38874759-38874760	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs578084489	chr10:38874761-38874762	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs77586723	chr10:38874764-38874765	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs533740954	chr10:38874765-38874766	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs78493046	chr10:38874772-38874773	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs573834235	chr10:38874774-38874775	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs75844613	chr10:38874775-38874776	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs192431678	chr10:38874779-38874780	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs78630899	chr10:38874784-38874785	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs35268645	chr10:38874796-38874797	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs74596563	chr10:38874798-38874799	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs62640628	chr10:38874812-38874813	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs62640629	chr10:38874822-38874823	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs62640630	chr10:38874824-38874825	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs62640631	chr10:38874827-38874828	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs62640632	chr10:38874829-38874830	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs145508583	chr10:38874845-38874846	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs78122014	chr10:38874848-38874849	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs75680138	chr10:38874853-38874854	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs575642116	chr10:38874855-38874856	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs544659371	chr10:38874859-38874860	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs138633487	chr10:38874868-38874869	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs111737664	chr10:38874874-38874875	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs564824335	chr10:38874875-38874876	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs140128651	chr10:38874880-38874881	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs527420996	chr10:38874882-38874883	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs144878465	chr10:38874888-38874889	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:156 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38868800-38883800	ZNF genes & repeats	Gastric	stomach
2	chr10:38868800-38884200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr10:38868800-38888600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:38868800-38888800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:38868800-38888800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr10:38868800-38888800	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:38868800-38888800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:38868800-38888800	ZNF genes & repeats	Brain Substantia Nigra	brain
9	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr10:38868800-38888800	ZNF genes & repeats	Fetal Lung	lung
12	chr10:38868800-38888800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr10:38868800-38889000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:38868800-38889000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr10:38869000-38874800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
16	chr10:38869000-38874800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:38869000-38875000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
18	chr10:38869000-38875000	ZNF genes & repeats	Colonic Mucosa	Colon
19	chr10:38869000-38875000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
20	chr10:38869000-38875200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
21	chr10:38869000-38875200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
22	chr10:38869000-38875400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
23	chr10:38869000-38875600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:38869000-38875800	ZNF genes & repeats	Colon Smooth Muscle	Colon
25	chr10:38869000-38876000	ZNF genes & repeats	Brain Hippocampus Middle	brain
26	chr10:38869000-38878600	ZNF genes & repeats	Brain Angular Gyrus	brain
27	chr10:38869000-38878800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr10:38869000-38882400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
29	chr10:38869000-38882400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
30	chr10:38869000-38882400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
31	chr10:38869000-38882400	ZNF genes & repeats	K562	blood
32	chr10:38869000-38882800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
33	chr10:38869000-38883600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
34	chr10:38869000-38883600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:38869000-38883800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:38869000-38884600	ZNF genes & repeats	Brain Anterior Caudate	brain
37	chr10:38869000-38885000	ZNF genes & repeats	GM12878-XiMat	blood
38	chr10:38869000-38885200	ZNF genes & repeats	Fetal Kidney	kidney
39	chr10:38869000-38887200	ZNF genes & repeats	Dnd41	blood
40	chr10:38869000-38888200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:38869000-38888600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:38869000-38888600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:38869000-38888600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
44	chr10:38869000-38888800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
45	chr10:38869000-38888800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
46	chr10:38869000-38888800	ZNF genes & repeats	Liver	Liver
47	chr10:38869000-38888800	ZNF genes & repeats	Fetal Brain Male	brain
48	chr10:38869000-38888800	ZNF genes & repeats	HUVEC	blood vessel
49	chr10:38869000-38889000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
50	chr10:38869000-38889000	ZNF genes & repeats	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links