Variant report

Variant	nsv550544
Chromosome Location	chr10:39075153-39140425
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3344)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3344 , 50 per page) page: 1 2 3 4 5 6 7 ... 67

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:39101146-39101347	HepG2	liver:	n/a	n/a
2	ARID3A	chr10:39137984-39138365	HepG2	liver:	n/a	n/a
3	ARID3A	chr10:39084886-39085042	HepG2	liver:	n/a	n/a
4	ARID3A	chr10:39120330-39120709	HepG2	liver:	n/a	n/a
5	ARID3A	chr10:39111976-39112008	K562	blood:	n/a	n/a
6	ARID3A	chr10:39137986-39138364	K562	blood:	n/a	n/a
7	ARID3A	chr10:39094146-39094810	HepG2	liver:	n/a	n/a
8	ATF1	chr10:39138839-39138849	K562	blood:	n/a	n/a
9	ATF1	chr10:39079417-39079652	K562	blood:	n/a	n/a
10	ATF1	chr10:39101129-39101345	K562	blood:	n/a	n/a
11	ATF1	chr10:39111967-39112298	K562	blood:	n/a	n/a
12	ATF1	chr10:39096921-39097012	K562	blood:	n/a	n/a
13	ATF1	chr10:39094147-39094818	K562	blood:	n/a	n/a
14	ATF1	chr10:39085784-39086384	K562	blood:	n/a	n/a
15	ATF1	chr10:39081594-39081615	K562	blood:	n/a	n/a
16	ATF1	chr10:39137984-39138362	K562	blood:	n/a	n/a
17	ATF1	chr10:39087981-39088542	K562	blood:	n/a	n/a
18	ATF1	chr10:39132602-39132636	K562	blood:	n/a	n/a
19	ATF1	chr10:39108122-39108151	K562	blood:	n/a	n/a
20	ATF1	chr10:39099416-39099784	K562	blood:	n/a	n/a
21	ATF1	chr10:39082175-39082550	K562	blood:	n/a	n/a
22	ATF1	chr10:39104075-39104275	K562	blood:	n/a	n/a
23	ATF1	chr10:39116383-39116586	K562	blood:	n/a	n/a
24	ATF1	chr10:39120139-39120714	K562	blood:	n/a	n/a
25	ATF1	chr10:39107137-39107560	K562	blood:	n/a	n/a
26	ATF1	chr10:39101808-39102176	K562	blood:	n/a	n/a
27	ATF1	chr10:39121257-39121640	K562	blood:	n/a	n/a
28	ATF1	chr10:39112590-39112972	K562	blood:	n/a	n/a
29	ATF1	chr10:39133656-39134024	K562	blood:	n/a	n/a
30	ATF3	chr10:39138058-39138214	K562	blood:	n/a	n/a
31	BACH1	chr10:39077338-39077365	K562	blood:	n/a	n/a
32	BACH1	chr10:39109782-39110409	K562	blood:	n/a	n/a
33	BACH1	chr10:39112084-39112106	K562	blood:	n/a	n/a
34	BATF	chr10:39101872-39102190	GM12878	blood:	n/a	n/a
35	BATF	chr10:39100585-39102351	GM12878	blood:	n/a	n/a
36	BATF	chr10:39102423-39103127	GM12878	blood:	n/a	n/a
37	BATF	chr10:39115920-39116744	GM12878	blood:	n/a	n/a
38	BATF	chr10:39100954-39101176	GM12878	blood:	n/a	n/a
39	BATF	chr10:39084351-39085497	GM12878	blood:	n/a	n/a
40	BATF	chr10:39137974-39138379	GM12878	blood:	n/a	n/a
41	BATF	chr10:39111893-39112404	GM12878	blood:	n/a	n/a
42	BATF	chr10:39115871-39116729	GM12878	blood:	n/a	n/a
43	BATF	chr10:39137087-39137611	GM12878	blood:	n/a	n/a
44	BATF	chr10:39127675-39128369	GM12878	blood:	n/a	n/a
45	BATF	chr10:39111908-39112141	GM12878	blood:	n/a	n/a
46	BATF	chr10:39107017-39107773	GM12878	blood:	n/a	n/a
47	BATF	chr10:39076528-39077293	GM12878	blood:	n/a	n/a
48	BATF	chr10:39098088-39098685	GM12878	blood:	n/a	n/a
49	BATF	chr10:39136134-39136932	GM12878	blood:	n/a	n/a
50	BATF	chr10:39125268-39126230	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-19	chr10:39122410-39122484	NONHSAT012845
2	lnc-ZNF37A-19	chr10:39121414-39121491	NONHSAT012845
3	lnc-ZNF37A-19	chr10:39114227-39114354	NONHSAT012845

No data

Variant related genes	Relation type
ENSG00000233832	TF binding region

Extended variants
information (count: 11700 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:11700 , 50 per page) page: 1 2 3 4 5 6 7 ... 234

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7093935	chr10:39075153-39075154	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs199940441	chr10:39075164-39075165	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs571278363	chr10:39075169-39075170	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs7087255	chr10:39075175-39075176	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs547203304	chr10:39075176-39075177	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs200689882	chr10:39075177-39075178	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs567035917	chr10:39075178-39075179	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs371001606	chr10:39075203-39075204	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs556021385	chr10:39075235-39075236	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs569159389	chr10:39075258-39075259	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs12774539	chr10:39075267-39075268	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs4069959	chr10:39075290-39075291	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs140211552	chr10:39075292-39075293	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs12765059	chr10:39075295-39075296	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs181067978	chr10:39075296-39075297	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs554009294	chr10:39075306-39075307	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs573770342	chr10:39075330-39075331	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs542505233	chr10:39075331-39075332	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs3970306	chr10:39075358-39075359	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs562706726	chr10:39075434-39075435	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs3970305	chr10:39075435-39075436	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs531601345	chr10:39075441-39075442	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs545341963	chr10:39075485-39075486	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs564852537	chr10:39075510-39075511	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs371715050	chr10:39075511-39075512	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs547456949	chr10:39075527-39075528	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs529798439	chr10:39075531-39075532	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs144989123	chr10:39075557-39075558	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs3970304	chr10:39075569-39075570	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs3970303	chr10:39075571-39075572	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs551842804	chr10:39075584-39075585	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs142218897	chr10:39075603-39075604	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs7094518	chr10:39075616-39075617	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs4069958	chr10:39075618-39075619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs531333219	chr10:39075632-39075633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs3970302	chr10:39075655-39075656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551400946	chr10:39075662-39075663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs370040512	chr10:39075669-39075670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs185557262	chr10:39075693-39075694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs7094659	chr10:39075697-39075698	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs181805398	chr10:39075706-39075707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs574004803	chr10:39075733-39075734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs3970301	chr10:39075740-39075741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs186966604	chr10:39075770-39075771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs200887598	chr10:39075772-39075773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs3970300	chr10:39075801-39075802	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs369033123	chr10:39075807-39075808	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs202141613	chr10:39075841-39075842	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs75287633	chr10:39075860-39075861	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs565216121	chr10:39075882-39075883	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:512 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39075000-39076400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:39075000-39076600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:39076400-39079800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
4	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr10:39076600-39077200	Flanking Bivalent TSS/Enh	Gastric	stomach
6	chr10:39076600-39079600	ZNF genes & repeats	Pancreas	Pancrea
7	chr10:39076600-39079800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:39076600-39079800	ZNF genes & repeats	NH-A	brain
9	chr10:39076600-39082600	ZNF genes & repeats	K562	blood
10	chr10:39076600-39083000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:39076600-39083200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
12	chr10:39076600-39086400	ZNF genes & repeats	Spleen	Spleen
13	chr10:39076600-39088600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:39076600-39088600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:39076600-39088800	ZNF genes & repeats	Brain Angular Gyrus	brain
16	chr10:39076600-39089000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr10:39076600-39091000	ZNF genes & repeats	HUVEC	blood vessel
18	chr10:39076600-39094800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
19	chr10:39076600-39095000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:39076600-39095000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
21	chr10:39076600-39095000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
22	chr10:39076600-39095200	ZNF genes & repeats	Colon Smooth Muscle	Colon
23	chr10:39076600-39097200	ZNF genes & repeats	Fetal Heart	heart
24	chr10:39076600-39099000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
25	chr10:39076600-39100800	ZNF genes & repeats	Brain Substantia Nigra	brain
26	chr10:39076600-39101000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:39076600-39101400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:39076600-39101800	ZNF genes & repeats	Colonic Mucosa	Colon
29	chr10:39076600-39102200	ZNF genes & repeats	Brain Anterior Caudate	brain
30	chr10:39076600-39102400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
31	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
32	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
34	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
35	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
36	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
37	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
38	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
39	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
40	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
41	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
44	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
45	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
46	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
47	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
49	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
50	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver

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