Variant report

Variant	nsv550549
Chromosome Location	chr10:39088829-39127278
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-19	chr10:39114227-39114354	NONHSAT012845
2	lnc-ZNF37A-19	chr10:39121414-39121491	NONHSAT012845
3	lnc-ZNF37A-19	chr10:39122410-39122484	NONHSAT012845

Extended variants
information (count: 6885 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:6885 , 50 per page) page: 1 2 3 4 5 6 7 ... 138

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2445674	chr10:39088829-39088830	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs572922054	chr10:39088835-39088836	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs541837601	chr10:39088836-39088837	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs74193952	chr10:39088883-39088884	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs561799090	chr10:39088890-39088891	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs111208627	chr10:39088903-39088904	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs111208628	chr10:39088908-39088909	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs374879151	chr10:39088909-39088910	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs369017135	chr10:39088911-39088912	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs77367820	chr10:39088915-39088916	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs375306720	chr10:39088934-39088935	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs371085961	chr10:39088956-39088957	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs188028145	chr10:39088988-39088989	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs563690330	chr10:39088996-39088997	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs377249641	chr10:39089005-39089006	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs532843415	chr10:39089023-39089024	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs200194242	chr10:39089031-39089032	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs369663701	chr10:39089035-39089036	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs201429046	chr10:39089036-39089037	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs552643583	chr10:39089053-39089054	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs373129485	chr10:39089063-39089064	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs77671060	chr10:39089069-39089070	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs376053908	chr10:39089073-39089074	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs78023855	chr10:39089074-39089075	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs75186780	chr10:39089077-39089078	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs74589584	chr10:39089086-39089087	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs200150566	chr10:39089091-39089092	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs75372582	chr10:39089094-39089095	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs80102414	chr10:39089097-39089098	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs78501527	chr10:39089103-39089104	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs79146085	chr10:39089108-39089109	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs559612750	chr10:39089109-39089110	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs79210132	chr10:39089110-39089111	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs370463911	chr10:39089119-39089120	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs528502710	chr10:39089128-39089129	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs79545546	chr10:39089133-39089134	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs75841773	chr10:39089134-39089135	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs75656143	chr10:39089135-39089136	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs76146059	chr10:39089136-39089137	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs79627223	chr10:39089141-39089142	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs550999911	chr10:39089144-39089145	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs75861906	chr10:39089147-39089148	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs571171293	chr10:39089148-39089149	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs76209840	chr10:39089150-39089151	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs369208028	chr10:39089163-39089164	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs183833741	chr10:39089164-39089165	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs78888880	chr10:39089175-39089176	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs151163078	chr10:39089197-39089198	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs550757836	chr10:39089203-39089204	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs111735283	chr10:39089214-39089215	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:323 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39089000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
3	chr10:39076600-39091000	ZNF genes & repeats	HUVEC	blood vessel
4	chr10:39076600-39094800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
5	chr10:39076600-39095000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:39076600-39095000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
7	chr10:39076600-39095000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
8	chr10:39076600-39095200	ZNF genes & repeats	Colon Smooth Muscle	Colon
9	chr10:39076600-39097200	ZNF genes & repeats	Fetal Heart	heart
10	chr10:39076600-39099000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
11	chr10:39076600-39100800	ZNF genes & repeats	Brain Substantia Nigra	brain
12	chr10:39076600-39101000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:39076600-39101400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:39076600-39101800	ZNF genes & repeats	Colonic Mucosa	Colon
15	chr10:39076600-39102200	ZNF genes & repeats	Brain Anterior Caudate	brain
16	chr10:39076600-39102400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
17	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
18	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
20	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
21	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
22	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
23	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
25	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
26	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
27	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
30	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
31	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
33	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
35	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
36	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
37	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
38	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
39	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
40	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
41	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
42	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
43	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
44	chr10:39076800-39089000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:39076800-39095000	ZNF genes & repeats	A549	lung
46	chr10:39076800-39095000	ZNF genes & repeats	GM12878-XiMat	blood
47	chr10:39076800-39095200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
48	chr10:39076800-39098800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:39076800-39111400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
50	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood

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