Variant report

Variant	nsv550555
Chromosome Location	chr10:39097912-39136170
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-19	chr10:39122410-39122484	NONHSAT012845
2	lnc-ZNF37A-19	chr10:39114227-39114354	NONHSAT012845
3	lnc-ZNF37A-19	chr10:39121414-39121491	NONHSAT012845

Extended variants
information (count: 6915 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:6915 , 50 per page) page: 1 2 3 4 5 6 7 ... 139

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7089520	chr10:39097912-39097913	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs202006090	chr10:39097930-39097931	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs568442587	chr10:39097934-39097935	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs545866971	chr10:39097955-39097956	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs546320671	chr10:39097956-39097957	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs559535023	chr10:39097967-39097968	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs559790800	chr10:39097970-39097971	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs112835323	chr10:39097971-39097972	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs12262658	chr10:39097979-39097980	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs548325471	chr10:39097986-39097987	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs374080617	chr10:39097991-39097992	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs201124579	chr10:39097995-39097996	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs36162758	chr10:39097996-39097997	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs80184936	chr10:39097998-39097999	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs74381115	chr10:39098005-39098006	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs551239684	chr10:39098008-39098009	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs74542098	chr10:39098015-39098016	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs3968463	chr10:39098024-39098025	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs570784302	chr10:39098025-39098026	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs71235421	chr10:39098029-39098030	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs200163112	chr10:39098035-39098036	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs77969730	chr10:39098036-39098037	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs77741449	chr10:39098037-39098038	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs555648999	chr10:39098040-39098041	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs4061449	chr10:39098044-39098045	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs80233180	chr10:39098054-39098055	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs77912333	chr10:39098055-39098056	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs78463116	chr10:39098075-39098076	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs575387530	chr10:39098079-39098080	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs75000482	chr10:39098081-39098082	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs558012457	chr10:39098089-39098090	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs75991045	chr10:39098090-39098091	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs79060671	chr10:39098102-39098103	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs4061448	chr10:39098106-39098107	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs577591757	chr10:39098109-39098110	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs539810614	chr10:39098112-39098113	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs78304271	chr10:39098119-39098120	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs559816654	chr10:39098129-39098130	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs76365897	chr10:39098132-39098133	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs111271904	chr10:39098135-39098136	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs75618020	chr10:39098139-39098140	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs75682634	chr10:39098140-39098141	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs76785264	chr10:39098141-39098142	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs78849897	chr10:39098144-39098145	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs79208087	chr10:39098153-39098154	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs7099369	chr10:39098154-39098155	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs562177378	chr10:39098156-39098157	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs77080923	chr10:39098159-39098160	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs199540921	chr10:39098164-39098165	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs201109715	chr10:39098165-39098166	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:328 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39099000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
3	chr10:39076600-39100800	ZNF genes & repeats	Brain Substantia Nigra	brain
4	chr10:39076600-39101000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:39076600-39101400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:39076600-39101800	ZNF genes & repeats	Colonic Mucosa	Colon
7	chr10:39076600-39102200	ZNF genes & repeats	Brain Anterior Caudate	brain
8	chr10:39076600-39102400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
9	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
10	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
12	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
13	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
15	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
17	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
19	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
22	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
23	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
25	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
27	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
28	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
29	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
30	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
33	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
34	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
35	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
36	chr10:39076800-39098800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:39076800-39111400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
38	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
39	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
40	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
41	chr10:39084400-39099600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr10:39090200-39100000	ZNF genes & repeats	K562	blood
43	chr10:39090200-39101800	ZNF genes & repeats	Brain Angular Gyrus	brain
44	chr10:39092200-39099200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:39092400-39101800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
46	chr10:39092600-39099000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
47	chr10:39093800-39099000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
48	chr10:39093800-39099400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:39093800-39099600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
50	chr10:39093800-39101600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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