Variant report

Variant	nsv550580
Chromosome Location	chr10:39121001-39154633
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:39150707..39151591-chr2:182675899..182676399,2	NB4	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-19	chr10:39121414-39121491	NONHSAT012845
2	lnc-ZNF37A-19	chr10:39122410-39122484	NONHSAT012845

Extended variants
information (count: 5925 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:5925 , 50 per page) page: 1 2 3 4 5 6 7 ... 119

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2168601	chr10:39121001-39121002	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs556184863	chr10:39121013-39121014	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs576257111	chr10:39121025-39121026	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs544690860	chr10:39121028-39121029	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs564571917	chr10:39121040-39121041	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs571685752	chr10:39121046-39121047	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs540772792	chr10:39121051-39121052	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs560640298	chr10:39121063-39121064	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs529468495	chr10:39121067-39121068	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs549527933	chr10:39121088-39121089	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs374747167	chr10:39121102-39121103	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs113515052	chr10:39121113-39121114	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs200728178	chr10:39121120-39121121	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs202054753	chr10:39121122-39121123	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs551767236	chr10:39121123-39121124	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs531519543	chr10:39121127-39121128	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs534176459	chr10:39121128-39121129	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs567713258	chr10:39121131-39121132	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs10437451	chr10:39121136-39121137	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs556286384	chr10:39121137-39121138	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs576138742	chr10:39121139-39121140	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112581160	chr10:39121146-39121147	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200701829	chr10:39121147-39121148	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs199820820	chr10:39121148-39121149	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs111398447	chr10:39121154-39121155	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs370701631	chr10:39121157-39121158	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs144974861	chr10:39121158-39121159	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs564328974	chr10:39121169-39121170	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs540583193	chr10:39121172-39121173	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs560673107	chr10:39121194-39121195	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs112633175	chr10:39121203-39121204	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs574441912	chr10:39121207-39121208	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs543136362	chr10:39121211-39121212	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs563126462	chr10:39121217-39121218	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs531811125	chr10:39121221-39121222	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs552146260	chr10:39121222-39121223	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs565539942	chr10:39121233-39121234	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs527692622	chr10:39121234-39121235	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs200082944	chr10:39121235-39121236	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs374185182	chr10:39121247-39121248	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs567775929	chr10:39121257-39121258	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs536785287	chr10:39121260-39121261	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs549983082	chr10:39121268-39121269	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs145918669	chr10:39121269-39121270	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs112298206	chr10:39121276-39121277	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs201219421	chr10:39121293-39121294	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs139770056	chr10:39121297-39121298	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs538444382	chr10:39121298-39121299	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs201949617	chr10:39121306-39121307	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs74914077	chr10:39121307-39121308	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:355 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
4	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
5	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
7	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
9	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
10	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
21	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
22	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
23	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
24	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
25	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
26	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
27	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
29	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
30	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
31	chr10:39093800-39130000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
32	chr10:39093800-39155000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr10:39096000-39142000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
34	chr10:39096600-39121600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:39102600-39121600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:39102800-39134400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
37	chr10:39102800-39154800	ZNF genes & repeats	Brain Anterior Caudate	brain
38	chr10:39102800-39155000	ZNF genes & repeats	Fetal Heart	heart
39	chr10:39103000-39121600	ZNF genes & repeats	GM12878-XiMat	blood
40	chr10:39103000-39155000	ZNF genes & repeats	Brain Substantia Nigra	brain
41	chr10:39103400-39121600	ZNF genes & repeats	K562	blood
42	chr10:39103800-39124200	ZNF genes & repeats	HUVEC	blood vessel
43	chr10:39104600-39154800	ZNF genes & repeats	Colonic Mucosa	Colon
44	chr10:39113800-39121600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
45	chr10:39113800-39121600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
46	chr10:39113800-39121600	ZNF genes & repeats	Colon Smooth Muscle	Colon
47	chr10:39113800-39121600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
48	chr10:39113800-39129400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:39113800-39135400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:39114000-39121600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood

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