Variant report

Variant	nsv550581
Chromosome Location	chr10:39124438-39154633
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:39150707..39151591-chr2:182675899..182676399,2	NB4	blood:

Extended variants
information (count: 5323 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:5323 , 50 per page) page: 1 2 3 4 5 6 7 ... 107

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12251754	chr10:39124438-39124439	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs74987718	chr10:39124439-39124440	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs142419473	chr10:39124450-39124451	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs61827566	chr10:39124451-39124452	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs139717778	chr10:39124453-39124454	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs74409328	chr10:39124454-39124455	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs376843731	chr10:39124455-39124456	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs76058975	chr10:39124467-39124468	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs75154212	chr10:39124469-39124470	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs78639353	chr10:39124472-39124473	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs77707254	chr10:39124482-39124483	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs77761443	chr10:39124484-39124485	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs75361020	chr10:39124494-39124495	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs533710559	chr10:39124498-39124499	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs566900734	chr10:39124499-39124500	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs75585208	chr10:39124503-39124504	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs61827567	chr10:39124511-39124512	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs111876437	chr10:39124514-39124515	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs61827568	chr10:39124522-39124523	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs374198378	chr10:39124532-39124533	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs61827569	chr10:39124537-39124538	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs66758419	chr10:39124538-39124539	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs200601391	chr10:39124542-39124543	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs569346835	chr10:39124558-39124559	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs538055162	chr10:39124559-39124560	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs71529036	chr10:39124562-39124563	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs558011125	chr10:39124564-39124565	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs61827570	chr10:39124567-39124568	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs571350662	chr10:39124571-39124572	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs201374743	chr10:39124575-39124576	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs61827571	chr10:39124576-39124577	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs377496897	chr10:39124578-39124579	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs371217499	chr10:39124582-39124583	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs370598778	chr10:39124591-39124592	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs374737624	chr10:39124592-39124593	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs199637822	chr10:39124593-39124594	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs12774587	chr10:39124596-39124597	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs368524330	chr10:39124603-39124604	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs61827572	chr10:39124607-39124608	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs375720930	chr10:39124608-39124609	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs542185972	chr10:39124609-39124610	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs75752487	chr10:39124623-39124624	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs555852723	chr10:39124624-39124625	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs538728837	chr10:39124629-39124630	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs544685852	chr10:39124630-39124631	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs199526502	chr10:39124631-39124632	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs200538908	chr10:39124637-39124638	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs141152608	chr10:39124642-39124643	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs533355970	chr10:39124646-39124647	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs540931351	chr10:39124648-39124649	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:295 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
3	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
4	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
6	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
8	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
18	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
19	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
20	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
22	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
23	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
24	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
25	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
26	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
27	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
28	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
29	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
30	chr10:39093800-39130000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
31	chr10:39093800-39155000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr10:39096000-39142000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr10:39102800-39134400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
34	chr10:39102800-39154800	ZNF genes & repeats	Brain Anterior Caudate	brain
35	chr10:39102800-39155000	ZNF genes & repeats	Fetal Heart	heart
36	chr10:39103000-39155000	ZNF genes & repeats	Brain Substantia Nigra	brain
37	chr10:39104600-39154800	ZNF genes & repeats	Colonic Mucosa	Colon
38	chr10:39113800-39129400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:39113800-39135400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:39114000-39134400	ZNF genes & repeats	Brain Angular Gyrus	brain
41	chr10:39114000-39153600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
42	chr10:39115000-39125000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
43	chr10:39118400-39129400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:39118600-39154600	ZNF genes & repeats	Fetal Kidney	kidney
45	chr10:39119000-39154800	ZNF genes & repeats	HepG2	liver
46	chr10:39122400-39124800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:39122400-39129200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:39122400-39134400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
49	chr10:39122400-39134600	ZNF genes & repeats	Colon Smooth Muscle	Colon
50	chr10:39122400-39147200	ZNF genes & repeats	K562	blood

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