Variant report

Variant	nsv550582
Chromosome Location	chr10:39127278-39148898
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3725 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:3725 , 50 per page) page: 1 2 3 4 5 6 7 ... 75

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4344766	chr10:39127278-39127279	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs534683324	chr10:39127285-39127286	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112661463	chr10:39127286-39127287	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs537348528	chr10:39127319-39127320	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs567847765	chr10:39127322-39127323	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs536952543	chr10:39127323-39127324	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs145501716	chr10:39127332-39127333	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs570308216	chr10:39127333-39127334	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs576380304	chr10:39127338-39127339	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs79971840	chr10:39127359-39127360	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs545350938	chr10:39127362-39127363	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs558662588	chr10:39127368-39127369	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs77928174	chr10:39127370-39127371	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572236715	chr10:39127376-39127377	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs77122910	chr10:39127377-39127378	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs541124572	chr10:39127382-39127383	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs560789325	chr10:39127388-39127389	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs529798254	chr10:39127399-39127400	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs61827589	chr10:39127413-39127414	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs570718127	chr10:39127414-39127415	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs559385188	chr10:39127419-39127420	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs201791419	chr10:39127421-39127422	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs528233163	chr10:39127424-39127425	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs373558115	chr10:39127425-39127426	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs538695041	chr10:39127426-39127427	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs200456154	chr10:39127434-39127435	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs536827256	chr10:39127436-39127437	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs111847303	chr10:39127443-39127444	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs570360780	chr10:39127446-39127447	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs538943081	chr10:39127447-39127448	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368889337	chr10:39127448-39127449	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs558890224	chr10:39127454-39127455	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs2124825	chr10:39127471-39127472	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs200342395	chr10:39127486-39127487	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs572100079	chr10:39127489-39127490	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs77897246	chr10:39127498-39127499	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs76096015	chr10:39127500-39127501	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs456649	chr10:39127503-39127504	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs200835619	chr10:39127506-39127507	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs74451628	chr10:39127521-39127522	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs375798120	chr10:39127524-39127525	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs74999189	chr10:39127529-39127530	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs554600795	chr10:39127532-39127533	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs541093698	chr10:39127536-39127537	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs113276527	chr10:39127537-39127538	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs543571592	chr10:39127542-39127543	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs201073744	chr10:39127547-39127548	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs563324378	chr10:39127549-39127550	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs113514397	chr10:39127554-39127555	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs200850798	chr10:39127567-39127568	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:260 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
3	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
4	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
6	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
8	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
18	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
19	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
20	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
22	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
23	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
24	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
25	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
26	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
27	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
28	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
29	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
30	chr10:39093800-39130000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
31	chr10:39093800-39155000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr10:39096000-39142000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr10:39102800-39134400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
34	chr10:39102800-39154800	ZNF genes & repeats	Brain Anterior Caudate	brain
35	chr10:39102800-39155000	ZNF genes & repeats	Fetal Heart	heart
36	chr10:39103000-39155000	ZNF genes & repeats	Brain Substantia Nigra	brain
37	chr10:39104600-39154800	ZNF genes & repeats	Colonic Mucosa	Colon
38	chr10:39113800-39129400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:39113800-39135400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:39114000-39134400	ZNF genes & repeats	Brain Angular Gyrus	brain
41	chr10:39114000-39153600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
42	chr10:39118400-39129400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:39118600-39154600	ZNF genes & repeats	Fetal Kidney	kidney
44	chr10:39119000-39154800	ZNF genes & repeats	HepG2	liver
45	chr10:39122400-39129200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:39122400-39134400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
47	chr10:39122400-39134600	ZNF genes & repeats	Colon Smooth Muscle	Colon
48	chr10:39122400-39147200	ZNF genes & repeats	K562	blood
49	chr10:39122400-39147600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
50	chr10:39122400-39154800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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