Variant report

Variant	nsv550596
Chromosome Location	chr10:42362711-42467126
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42387191..42387693-chr16:34189725..34190226,2	MCF-7	breast:
2	chr10:42398870..42399833-chr14:43322802..43323708,2	MCF-7	breast:
3	chr10:42384702..42385548-chr19:46850298..46850828,2	MCF-7	breast:
4	chr10:42398850..42399487-chr10:42529302..42530228,2	MCF-7	breast:
5	chr10:42397869..42400416-chr19:27731046..27733513,2	MCF-7	breast:
6	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:
7	chr10:42385048..42385927-chr20:45917973..45918793,2	MCF-7	breast:
8	chr10:42399009..42399706-chr10:42529715..42530239,2	MCF-7	breast:
9	chr10:42387171..42387692-chr16:33888891..33889406,2	MCF-7	breast:
10	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:
11	chr10:42396677..42397179-chr2:92268827..92269338,2	MCF-7	breast:
12	chr10:42385424..42387506-chr16:88876940..88878642,2	MCF-7	breast:
13	chr1:149222942..149224601-chr10:42397745..42399854,2	MCF-7	breast:
14	chr10:42385202..42385933-chr7:149119111..149120081,2	MCF-7	breast:
15	chr10:42385049..42385862-chr2:89835873..89836374,2	MCF-7	breast:
16	chr10:42398850..42399800-chr10:42529302..42530219,2	MCF-7	breast:

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNYL2-11	chr10:42406659-42406684	NONHSAT012850
2	lnc-CCNYL2-11	chr10:42407539-42407748	NONHSAT012850
3	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847
4	lnc-BMS1-12	chr10:42399434-42399525	NONHSAT012847
5	lnc-BMS1-12	chr10:42397884-42397971	NONHSAT012847
6	lnc-BMS1-12	chr10:42399130-42399193	NONHSAT012847
7	lnc-BMS1-12	chr10:42383750-42383799	NONHSAT012847
8	lnc-BMS1-12	chr10:42387203-42387475	NONHSAT012847
9	lnc-BMS1-12	chr10:42398139-42398174	NONHSAT012847
10	lnc-BMS1-12	chr10:42389851-42389943	NONHSAT012847
11	lnc-BMS1-11	chr10:42385001-42385282	NONHSAT012848
12	lnc-BMS1-12	chr10:42400201-42400696	NONHSAT012847
13	lnc-BMS1-12	chr10:42423481-42423551	NONHSAT012847
14	lnc-BMS1-12	chr10:42406916-42406946	NONHSAT012847
15	lnc-BMS1-12	chr10:42398302-42398937	NONHSAT012847

No data

Variant related genes	Relation type
ENSG00000198931	chromatin interactions
ENSG00000206737	chromatin interactions
ENSG00000261842	chromatin interactions
ENSG00000011485	chromatin interactions

Extended variants
information (count: 17686 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:17686 , 50 per page) page: 1 2 3 4 5 6 7 ... 354

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2878267	chr10:42362711-42362712	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs573760208	chr10:42362730-42362731	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs542431755	chr10:42362737-42362738	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs556046538	chr10:42362740-42362741	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs55828998	chr10:42362743-42362744	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs11517393	chr10:42362748-42362749	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs143828704	chr10:42362751-42362752	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs527428453	chr10:42362753-42362754	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs58994763	chr10:42362754-42362755	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs374397870	chr10:42362758-42362759	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs62642157	chr10:42362759-42362760	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs368025237	chr10:42362768-42362769	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs371485264	chr10:42362774-42362775	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs112129489	chr10:42362777-42362778	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs374967607	chr10:42362778-42362779	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs372566278	chr10:42362787-42362788	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs532040122	chr10:42362792-42362793	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs9702284	chr10:42362793-42362794	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs201894013	chr10:42362794-42362795	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs571601588	chr10:42362796-42362797	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs534064008	chr10:42362806-42362807	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs200709100	chr10:42362810-42362811	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs147187913	chr10:42362811-42362812	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs199633325	chr10:42362813-42362814	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs567611958	chr10:42362816-42362817	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs536447246	chr10:42362835-42362836	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs200747192	chr10:42362840-42362841	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs368842464	chr10:42362846-42362847	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs555936054	chr10:42362850-42362851	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs575970000	chr10:42362859-42362860	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs544886562	chr10:42362860-42362861	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs558156732	chr10:42362864-42362865	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs192600136	chr10:42362870-42362871	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs572029517	chr10:42362871-42362872	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs145954010	chr10:42362873-42362874	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs561048045	chr10:42362875-42362876	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs574402885	chr10:42362876-42362877	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs146836729	chr10:42362880-42362881	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs141610808	chr10:42362881-42362882	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs62642158	chr10:42362885-42362886	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs371465186	chr10:42362892-42362893	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs61829960	chr10:42362901-42362902	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs563065529	chr10:42362905-42362906	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs532080351	chr10:42362910-42362911	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs552082928	chr10:42362912-42362913	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs61829961	chr10:42362920-42362921	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs565414772	chr10:42362925-42362926	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs201978984	chr10:42362932-42362933	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs527704310	chr10:42362934-42362935	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs547425489	chr10:42362940-42362941	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Breast cancer	22522925	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1173 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42354800-42366400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:42354800-42367200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr10:42354800-42367200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr10:42354800-42367200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
5	chr10:42354800-42367400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr10:42354800-42367400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr10:42354800-42367400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr10:42354800-42367400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr10:42354800-42368000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:42354800-42368000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr10:42355000-42362800	ZNF genes & repeats	Psoas Muscle	Psoas
12	chr10:42355000-42365400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
13	chr10:42355000-42365400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:42355000-42365400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
15	chr10:42355000-42365600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
16	chr10:42355000-42365600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
17	chr10:42355000-42365600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:42355000-42365600	ZNF genes & repeats	Primary B cells from cord blood	blood
19	chr10:42355000-42365600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
20	chr10:42355000-42365600	ZNF genes & repeats	Aorta	Aorta
21	chr10:42355000-42365600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr10:42355000-42365600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
23	chr10:42355000-42365600	ZNF genes & repeats	Stomach Mucosa	stomach
24	chr10:42355000-42365600	ZNF genes & repeats	GM12878-XiMat	blood
25	chr10:42355000-42365600	ZNF genes & repeats	HepG2	liver
26	chr10:42355000-42365600	ZNF genes & repeats	HSMMtube	muscle
27	chr10:42355000-42365600	ZNF genes & repeats	HUVEC	blood vessel
28	chr10:42355000-42365800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr10:42355000-42365800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
30	chr10:42355000-42365800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:42355000-42365800	ZNF genes & repeats	Fetal Heart	heart
32	chr10:42355000-42365800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
33	chr10:42355000-42365800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
34	chr10:42355000-42365800	ZNF genes & repeats	K562	blood
35	chr10:42355000-42365800	ZNF genes & repeats	NH-A	brain
36	chr10:42355000-42366000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:42355000-42366000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:42355000-42366000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
40	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
42	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
43	chr10:42355000-42366000	ZNF genes & repeats	Brain Angular Gyrus	brain
44	chr10:42355000-42366000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
45	chr10:42355000-42366000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
46	chr10:42355000-42366000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
47	chr10:42355000-42366000	ZNF genes & repeats	Brain Substantia Nigra	brain
48	chr10:42355000-42366000	ZNF genes & repeats	Colon Smooth Muscle	Colon
49	chr10:42355000-42366000	ZNF genes & repeats	Pancreas	Pancrea
50	chr10:42355000-42366000	ZNF genes & repeats	A549	lung

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