Variant report

Variant	nsv550610
Chromosome Location	chr10:42401249-42503182
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNYL2-10	chr10:42489651-42489811	NONHSAT012851
2	lnc-CCNYL2-10	chr10:42501405-42501470	NONHSAT012851
3	lnc-BMS1-12	chr10:42406916-42406946	NONHSAT012847
4	lnc-CCNYL2-11	chr10:42407539-42407748	NONHSAT012850
5	lnc-CCNYL2-10	chr10:42498812-42498914	NONHSAT012851
6	lnc-BMS1-12	chr10:42423481-42423551	NONHSAT012847
7	lnc-CCNYL2-11	chr10:42406659-42406684	NONHSAT012850

No data

Extended variants
information (count: 9589 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:9589 , 50 per page) page: 1 2 3 4 5 6 7 ... 192

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74908662	chr10:42401261-42401262	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs12259489	chr10:42401264-42401265	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs190530896	chr10:42401266-42401267	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs533561947	chr10:42401268-42401269	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs555029670	chr10:42401270-42401271	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs12254950	chr10:42401292-42401293	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs75701022	chr10:42401296-42401297	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs537246859	chr10:42401297-42401298	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs557484979	chr10:42401300-42401301	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs577479638	chr10:42401304-42401305	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs567129460	chr10:42401311-42401312	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs546444947	chr10:42401331-42401332	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs61848875	chr10:42401332-42401333	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs76397044	chr10:42401341-42401342	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs553111551	chr10:42401342-42401343	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs78669938	chr10:42401343-42401344	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs577279000	chr10:42401348-42401349	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs80212260	chr10:42401349-42401350	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs200973819	chr10:42401354-42401355	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs542374902	chr10:42401375-42401376	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs562152570	chr10:42401378-42401379	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs530771591	chr10:42401381-42401382	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs544077707	chr10:42401395-42401396	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs564265293	chr10:42401397-42401398	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs533091094	chr10:42401401-42401402	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs201940078	chr10:42401402-42401403	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs528913310	chr10:42401418-42401419	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs200032290	chr10:42401421-42401422	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs546852499	chr10:42401422-42401423	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs201184314	chr10:42401424-42401425	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs575384645	chr10:42401425-42401426	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs186970679	chr10:42401456-42401457	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs189811921	chr10:42401459-42401460	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs112144602	chr10:42401464-42401465	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs566165455	chr10:42401465-42401466	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs373960935	chr10:42401466-42401467	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs112333215	chr10:42401474-42401475	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs12255065	chr10:42401479-42401480	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs185202039	chr10:42401483-42401484	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs112170311	chr10:42401485-42401486	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs573760887	chr10:42401498-42401499	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs189906904	chr10:42401506-42401507	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs77024616	chr10:42401510-42401511	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs186363510	chr10:42401513-42401514	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs548716316	chr10:42401516-42401517	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs192115689	chr10:42401523-42401524	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs537509071	chr10:42401534-42401535	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs71476306	chr10:42401537-42401538	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs201445720	chr10:42401545-42401546	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs10909003	chr10:42401555-42401556	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:437 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
2	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
3	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
4	chr10:42373600-42402400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:42373600-42402400	ZNF genes & repeats	Fetal Stomach	stomach
6	chr10:42373600-42402600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
7	chr10:42373600-42402600	ZNF genes & repeats	Liver	Liver
8	chr10:42373600-42402600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr10:42373600-42402600	ZNF genes & repeats	Fetal Brain Male	brain
10	chr10:42373600-42402800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:42373600-42402800	ZNF genes & repeats	HepG2	liver
12	chr10:42373600-42403600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
13	chr10:42373600-42405200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr10:42373600-42409400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:42373600-42409400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr10:42373600-42409600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr10:42373600-42409800	ZNF genes & repeats	Primary T cells from cord blood	blood
18	chr10:42373600-42410000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
19	chr10:42373600-42412000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
20	chr10:42373600-42413800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr10:42373600-42416800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr10:42373600-42420800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
23	chr10:42373600-42421000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:42373800-42408000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
25	chr10:42373800-42408800	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr10:42379400-42402400	ZNF genes & repeats	Fetal Intestine Large	intestine
27	chr10:42386600-42403400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:42390800-42402600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:42398000-42402600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
30	chr10:42398600-42401800	Weak transcription	NHEK	skin
31	chr10:42400600-42401600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:42400600-42401800	Weak transcription	Osteobl	bone
33	chr10:42400800-42401600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:42400800-42401600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:42400800-42401600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:42400800-42401600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr10:42400800-42401600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr10:42400800-42401600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr10:42400800-42401600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:42400800-42401600	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:42400800-42401600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:42400800-42401600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:42400800-42401600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr10:42400800-42401600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr10:42400800-42401600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:42400800-42401600	Weak transcription	Adipose Nuclei	Adipose
47	chr10:42400800-42401600	Weak transcription	Aorta	Aorta
48	chr10:42400800-42401600	Weak transcription	Brain Substantia Nigra	brain
49	chr10:42400800-42401600	Weak transcription	Colon Smooth Muscle	Colon
50	chr10:42400800-42401600	Weak transcription	Duodenum Mucosa	Duodenum

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