Variant report

Variant	nsv550611
Chromosome Location	chr10:42495328-42517060
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNYL2-10	chr10:42498812-42498914	NONHSAT012851
2	lnc-CCNYL2-10	chr10:42501405-42501470	NONHSAT012851
3	lnc-CCNYL2-10	chr10:42506989-42507177	NONHSAT012851

Extended variants
information (count: 1950 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:1950 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10908977	chr10:42495328-42495329	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs552127499	chr10:42495389-42495390	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs76474803	chr10:42495410-42495411	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs534626438	chr10:42495415-42495416	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs554002381	chr10:42495419-42495420	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs140791495	chr10:42495457-42495458	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs527789093	chr10:42495461-42495462	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs550755483	chr10:42495466-42495467	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs34571685	chr10:42495483-42495484	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs556377677	chr10:42495512-42495513	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs569147161	chr10:42495540-42495541	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs183362644	chr10:42495571-42495572	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs10908978	chr10:42495578-42495579	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs188056711	chr10:42495589-42495590	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs577802641	chr10:42495590-42495591	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs552362063	chr10:42495603-42495604	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs374027559	chr10:42495617-42495618	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs149011924	chr10:42495619-42495620	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs371915985	chr10:42495620-42495621	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs36009880	chr10:42495625-42495626	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs541421222	chr10:42495632-42495633	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs150875257	chr10:42495636-42495637	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs139337505	chr10:42495637-42495638	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs77962870	chr10:42495653-42495654	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs374755908	chr10:42495695-42495696	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs191266715	chr10:42495699-42495700	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs116058703	chr10:42495714-42495715	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs565776029	chr10:42495725-42495726	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs528025679	chr10:42495736-42495737	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs183785896	chr10:42495763-42495764	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs540375585	chr10:42495774-42495775	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs370867728	chr10:42495783-42495784	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs189746497	chr10:42495794-42495795	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs570119042	chr10:42495802-42495803	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs11499346	chr10:42495807-42495808	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs558737517	chr10:42495809-42495810	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs10797135	chr10:42495811-42495812	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
38	rs149222845	chr10:42495825-42495826	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs551759635	chr10:42495895-42495896	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs574763876	chr10:42495902-42495903	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs201891350	chr10:42495908-42495909	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs543712155	chr10:42495909-42495910	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs563589771	chr10:42495911-42495912	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs11499347	chr10:42495920-42495921	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs77301568	chr10:42495931-42495932	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs559177734	chr10:42495946-42495947	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs192741273	chr10:42495965-42495966	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs143151052	chr10:42495970-42495971	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs146674229	chr10:42496008-42496009	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs530442088	chr10:42496025-42496026	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42491200-42498800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:42493800-42495400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr10:42497400-42499200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr10:42499400-42501800	ZNF genes & repeats	Liver	Liver
5	chr10:42501600-42503000	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr10:42502400-42523600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:42504000-42506200	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:42505800-42509200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr10:42506000-42509200	ZNF genes & repeats	Liver	Liver
10	chr10:42506200-42508600	ZNF genes & repeats	Psoas Muscle	Psoas
11	chr10:42509600-42509800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr10:42509800-42513800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chr10:42510200-42510600	ZNF genes & repeats	Liver	Liver
14	chr10:42513200-42513600	Active TSS	Fetal Heart	heart

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