Variant report

Variant	nsv550653
Chromosome Location	chr10:42662782-42672585
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1171 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:1171 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs533300806	chr10:42662786-42662787	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs368488655	chr10:42662791-42662792	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs148415757	chr10:42662803-42662804	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs146836581	chr10:42662807-42662808	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs201480095	chr10:42662808-42662809	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs61846231	chr10:42662813-42662814	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs200625087	chr10:42662822-42662823	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs201436979	chr10:42662830-42662831	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs535449287	chr10:42662839-42662840	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs111787199	chr10:42662850-42662851	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs549282509	chr10:42662853-42662854	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs61846232	chr10:42662868-42662869	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs370552489	chr10:42662873-42662874	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs200947221	chr10:42662878-42662879	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs569125297	chr10:42662885-42662886	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs201908616	chr10:42662891-42662892	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs61846233	chr10:42662895-42662896	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs61846234	chr10:42662898-42662899	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs61846235	chr10:42662902-42662903	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs143214023	chr10:42662908-42662909	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs61846236	chr10:42662914-42662915	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs61846237	chr10:42662918-42662919	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs113920023	chr10:42662922-42662923	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs376798206	chr10:42662923-42662924	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs61846238	chr10:42662924-42662925	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs61846254	chr10:42662932-42662933	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs200213843	chr10:42662934-42662935	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201120602	chr10:42662944-42662945	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs577908715	chr10:42662950-42662951	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs533913297	chr10:42662951-42662952	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs151117701	chr10:42662983-42662984	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs553567860	chr10:42662998-42662999	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs573596727	chr10:42662999-42663000	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs542229058	chr10:42663003-42663004	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs371989614	chr10:42663009-42663010	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs77673144	chr10:42663015-42663016	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs12777016	chr10:42663017-42663018	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs199528435	chr10:42663020-42663021	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs28972017	chr10:42663023-42663024	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs183318061	chr10:42663030-42663031	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs544502340	chr10:42663032-42663033	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs28970625	chr10:42663035-42663036	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs113260342	chr10:42663051-42663052	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs188719543	chr10:42663052-42663053	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs192296530	chr10:42663072-42663073	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs75306647	chr10:42663074-42663075	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs564368243	chr10:42663076-42663077	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs113530262	chr10:42663082-42663083	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs533333465	chr10:42663094-42663095	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112946120	chr10:42663095-42663096	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42655800-42668200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr10:42660000-42668200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr10:42660400-42668000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:42660400-42668000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr10:42660600-42668000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:42661000-42667600	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:42661200-42663000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:42661200-42663200	ZNF genes & repeats	Brain Anterior Caudate	brain
9	chr10:42661200-42663200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
10	chr10:42661200-42664400	ZNF genes & repeats	Brain Angular Gyrus	brain
11	chr10:42661200-42667000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr10:42661200-42667200	ZNF genes & repeats	Brain Substantia Nigra	brain
13	chr10:42661200-42667400	ZNF genes & repeats	K562	blood
14	chr10:42661200-42667600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
15	chr10:42661200-42667600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:42661200-42667600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
17	chr10:42661200-42667600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
18	chr10:42661200-42667600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
19	chr10:42661200-42667600	ZNF genes & repeats	Fetal Brain Male	brain
20	chr10:42661200-42667600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
21	chr10:42661200-42667800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
22	chr10:42661200-42667800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:42661200-42667800	ZNF genes & repeats	Adipose Nuclei	Adipose
24	chr10:42661200-42667800	ZNF genes & repeats	Fetal Heart	heart
25	chr10:42661200-42667800	ZNF genes & repeats	Fetal Lung	lung
26	chr10:42661200-42668000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
27	chr10:42661200-42668200	ZNF genes & repeats	Liver	Liver
28	chr10:42661400-42667200	ZNF genes & repeats	Primary B cells from cord blood	blood
29	chr10:42661400-42667200	ZNF genes & repeats	GM12878-XiMat	blood
30	chr10:42661400-42667400	ZNF genes & repeats	HepG2	liver
31	chr10:42661400-42667600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
32	chr10:42661400-42667600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
33	chr10:42661400-42667600	ZNF genes & repeats	Fetal Kidney	kidney
34	chr10:42661400-42667600	ZNF genes & repeats	HUVEC	blood vessel
35	chr10:42661400-42667800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
36	chr10:42661600-42666800	Weak transcription	NHDF-Ad	bronchial
37	chr10:42661800-42662800	Weak transcription	NHEK	skin
38	chr10:42662800-42663000	ZNF genes & repeats	NHEK	skin
39	chr10:42663600-42664200	ZNF genes & repeats	NH-A	brain
40	chr10:42666000-42667600	ZNF genes & repeats	Gastric	stomach
41	chr10:42666800-42667400	ZNF genes & repeats	NH-A	brain
42	chr10:42666800-42667600	ZNF genes & repeats	NHDF-Ad	bronchial
43	chr10:42667200-42667600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
44	chr10:42667200-42667600	ZNF genes & repeats	Brain Hippocampus Middle	brain
45	chr10:42667800-42668200	Weak transcription	NHDF-Ad	bronchial
46	chr10:42668000-42668200	Weak transcription	Fetal Lung	lung
47	chr10:42668000-42668400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:42668200-42673400	Weak transcription	Liver	Liver
49	chr10:42672400-42672600	Active TSS	Psoas Muscle	Psoas

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