Variant report

Variant	nsv550660
Chromosome Location	chr10:42663665-42672585
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1035 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:1035 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111209074	chr10:42663677-42663678	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs558169059	chr10:42663688-42663689	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs565666613	chr10:42663695-42663696	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs200645389	chr10:42663696-42663697	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs201645882	chr10:42663705-42663706	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs200168576	chr10:42663709-42663710	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs62639309	chr10:42663712-42663713	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs574165103	chr10:42663729-42663730	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs201682660	chr10:42663735-42663736	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs4576772	chr10:42663741-42663742	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs576563664	chr10:42663745-42663746	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs545517425	chr10:42663752-42663753	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs565165514	chr10:42663757-42663758	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572392005	chr10:42663758-42663759	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs200975920	chr10:42663768-42663769	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs561208739	chr10:42663774-42663775	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs529842710	chr10:42663775-42663776	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs549526180	chr10:42663786-42663787	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs563131793	chr10:42663801-42663802	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs532121558	chr10:42663814-42663815	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs111209076	chr10:42663819-42663820	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs551833382	chr10:42663820-42663821	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs565573421	chr10:42663832-42663833	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs534574364	chr10:42663833-42663834	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs369717912	chr10:42663836-42663837	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547794837	chr10:42663837-42663838	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs567899825	chr10:42663842-42663843	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201931440	chr10:42663858-42663859	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs188843344	chr10:42663883-42663884	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs111209077	chr10:42663896-42663897	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs536846171	chr10:42663901-42663902	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs111209078	chr10:42663911-42663912	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs147658041	chr10:42663924-42663925	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs368920972	chr10:42663928-42663929	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs144732766	chr10:42663930-42663931	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs4526731	chr10:42663932-42663933	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs111209079	chr10:42663944-42663945	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs539172403	chr10:42663947-42663948	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs558978672	chr10:42663957-42663958	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs111209080	chr10:42663963-42663964	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs547874139	chr10:42663964-42663965	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs111209081	chr10:42663967-42663968	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs561007353	chr10:42663986-42663987	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs541370179	chr10:42663987-42663988	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs377373146	chr10:42663996-42663997	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs561036624	chr10:42663997-42663998	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs370893073	chr10:42664006-42664007	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs530247156	chr10:42664024-42664025	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs563170456	chr10:42664025-42664026	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs202001503	chr10:42664026-42664027	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42655800-42668200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr10:42660000-42668200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr10:42660400-42668000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:42660400-42668000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr10:42660600-42668000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:42661000-42667600	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:42661200-42664400	ZNF genes & repeats	Brain Angular Gyrus	brain
8	chr10:42661200-42667000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr10:42661200-42667200	ZNF genes & repeats	Brain Substantia Nigra	brain
10	chr10:42661200-42667400	ZNF genes & repeats	K562	blood
11	chr10:42661200-42667600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr10:42661200-42667600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:42661200-42667600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
14	chr10:42661200-42667600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
15	chr10:42661200-42667600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
16	chr10:42661200-42667600	ZNF genes & repeats	Fetal Brain Male	brain
17	chr10:42661200-42667600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr10:42661200-42667800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr10:42661200-42667800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:42661200-42667800	ZNF genes & repeats	Adipose Nuclei	Adipose
21	chr10:42661200-42667800	ZNF genes & repeats	Fetal Heart	heart
22	chr10:42661200-42667800	ZNF genes & repeats	Fetal Lung	lung
23	chr10:42661200-42668000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
24	chr10:42661200-42668200	ZNF genes & repeats	Liver	Liver
25	chr10:42661400-42667200	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr10:42661400-42667200	ZNF genes & repeats	GM12878-XiMat	blood
27	chr10:42661400-42667400	ZNF genes & repeats	HepG2	liver
28	chr10:42661400-42667600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
29	chr10:42661400-42667600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
30	chr10:42661400-42667600	ZNF genes & repeats	Fetal Kidney	kidney
31	chr10:42661400-42667600	ZNF genes & repeats	HUVEC	blood vessel
32	chr10:42661400-42667800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
33	chr10:42661600-42666800	Weak transcription	NHDF-Ad	bronchial
34	chr10:42663600-42664200	ZNF genes & repeats	NH-A	brain
35	chr10:42666000-42667600	ZNF genes & repeats	Gastric	stomach
36	chr10:42666800-42667400	ZNF genes & repeats	NH-A	brain
37	chr10:42666800-42667600	ZNF genes & repeats	NHDF-Ad	bronchial
38	chr10:42667200-42667600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
39	chr10:42667200-42667600	ZNF genes & repeats	Brain Hippocampus Middle	brain
40	chr10:42667800-42668200	Weak transcription	NHDF-Ad	bronchial
41	chr10:42668000-42668200	Weak transcription	Fetal Lung	lung
42	chr10:42668000-42668400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:42668200-42673400	Weak transcription	Liver	Liver
44	chr10:42672400-42672600	Active TSS	Psoas Muscle	Psoas

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