Variant report

Variant	nsv550980
Chromosome Location	chr10:56461036-56473373
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:53779538..53781883-chr10:56470843..56472932,2	MCF-7	breast:

Extended variants
information (count: 237 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:237 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558189536	chr10:56466414-56466415	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs557685089	chr10:56466416-56466417	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs372052016	chr10:56466443-56466444	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs185551484	chr10:56466444-56466445	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs543690289	chr10:56466456-56466457	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs557509645	chr10:56466469-56466470	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs111777699	chr10:56466470-56466471	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs573827139	chr10:56466478-56466479	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs189086992	chr10:56466486-56466487	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs113858185	chr10:56466487-56466488	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs528099552	chr10:56466493-56466494	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs544963055	chr10:56466539-56466540	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs140096001	chr10:56466550-56466551	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs10763128	chr10:56466571-56466572	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs550547261	chr10:56466597-56466598	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs112394438	chr10:56466602-56466603	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs529796046	chr10:56466614-56466615	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs549068774	chr10:56466646-56466647	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs111977097	chr10:56466664-56466665	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs543404078	chr10:56466684-56466685	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs144968012	chr10:56466738-56466739	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs561672597	chr10:56466764-56466765	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs181757697	chr10:56466795-56466796	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs571876728	chr10:56466796-56466797	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs112016438	chr10:56466840-56466841	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs537747710	chr10:56466858-56466859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs78188595	chr10:56466877-56466878	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs17500902	chr10:56466912-56466913	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs113719939	chr10:56467007-56467008	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs114509749	chr10:56467029-56467030	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs572942005	chr10:56467034-56467035	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs75403532	chr10:56467064-56467065	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs113215693	chr10:56467213-56467214	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs111260134	chr10:56467228-56467229	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs541143556	chr10:56467238-56467239	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs186057492	chr10:56467245-56467246	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs373333347	chr10:56467274-56467275	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs560800328	chr10:56467275-56467276	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs192073857	chr10:56467314-56467315	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs370944519	chr10:56467487-56467488	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs111990876	chr10:56467539-56467540	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs546355372	chr10:56467545-56467546	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs12413003	chr10:56467563-56467564	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs183965496	chr10:56467570-56467571	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs551533326	chr10:56467581-56467582	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs571607389	chr10:56467598-56467599	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs12413015	chr10:56467657-56467658	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs551301980	chr10:56467658-56467659	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs10825378	chr10:56467678-56467679	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs4935545	chr10:56467753-56467754	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Developmental delay	21948486	CNVD
Intellectual disability	21948486	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Colorectal cancer	16774939	CNVD
Autism	20858243	CNVD
Breast cancer	22522925	CNVD
Usher type I cohort	17277737	CNVD
Usher type I cohort	21436283	CNVD
Leukemia	21357790	CNVD
Medulloblastoma	22832581	CNVD
Cancer	20164919	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56466400-56471000	Enhancers	Fetal Lung	lung
2	chr10:56466600-56469000	Enhancers	Fetal Brain Male	brain
3	chr10:56467600-56468800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:56468600-56469200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:56469200-56470600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:56470600-56471000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:56471000-56472000	Weak transcription	Fetal Lung	lung
8	chr10:56472200-56472400	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links