Variant report

Variant	nsv551024
Chromosome Location	chr10:56964197-57011352
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZWINT-4	chr10:57007515-57007648	ENSG00000236744.2
2	lnc-ZWINT-4	chr10:57007508-57007648	ENSG00000236744.1

Extended variants
information (count: 303 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:303 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558019592	chr10:56977864-56977865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs571353549	chr10:56977870-56977871	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs537027712	chr10:56977892-56977893	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs184520096	chr10:56977914-56977915	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs574014703	chr10:56977919-56977920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs542826286	chr10:56977998-56977999	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs188183280	chr10:56978009-56978010	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs573068163	chr10:56978029-56978030	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs77337663	chr10:56978070-56978071	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs191430189	chr10:56978075-56978076	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs575232485	chr10:56978085-56978086	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs543829437	chr10:56978088-56978089	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs184338400	chr10:56978092-56978093	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs189955656	chr10:56978100-56978101	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs529709500	chr10:56978104-56978105	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs72803806	chr10:56978134-56978135	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs559561589	chr10:56978159-56978160	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs558140747	chr10:56978170-56978171	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs528659007	chr10:56978200-56978201	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs181219847	chr10:56978259-56978260	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs187024342	chr10:56978264-56978265	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs142492901	chr10:56978323-56978324	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs373736217	chr10:56978340-56978341	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs188966763	chr10:56978380-56978381	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs536389440	chr10:56978389-56978390	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs553503924	chr10:56978400-56978401	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs527530832	chr10:56992202-56992203	Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs536452997	chr10:56992376-56992377	Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs553570144	chr10:56992390-56992391	Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs2680325	chr10:56992397-56992398	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs375704417	chr10:56992421-56992422	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs2680326	chr10:56992517-56992518	Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs143633600	chr10:56992531-56992532	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs544571270	chr10:56992564-56992565	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs543165242	chr10:56992574-56992575	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs555012916	chr10:56992655-56992656	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs561378921	chr10:56992657-56992658	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs192979830	chr10:56992683-56992684	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs573367319	chr10:56992727-56992728	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs146786354	chr10:56992755-56992756	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs560326695	chr10:56992768-56992769	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs532194870	chr10:56992770-56992771	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs185259953	chr10:56992773-56992774	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs190487514	chr10:56992803-56992804	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs148916834	chr10:56992808-56992809	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs201247948	chr10:56992828-56992829	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs386371427	chr10:56992831-56992832	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs79375426	chr10:56992832-56992833	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs68169397	chr10:56992833-56992834	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs547742144	chr10:56992885-56992886	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Breast cancer	22522925	CNVD
Usher type I cohort	17277737	CNVD
Usher type I cohort	21436283	CNVD
Leukemia	21357790	CNVD
Medulloblastoma	22832581	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56977800-56978400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:56992200-56993600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:56992400-56992600	Enhancers	GM12878-XiMat	blood
4	chr10:56992400-56992600	Enhancers	Hela-S3	cervix
5	chr10:56992400-56992800	Active TSS	Stomach Smooth Muscle	stomach
6	chr10:56992400-56993400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:56992400-56993400	Active TSS	Duodenum Mucosa	Duodenum
8	chr10:56992600-56993000	Enhancers	Liver	Liver
9	chr10:56992600-56993400	Active TSS	GM12878-XiMat	blood
10	chr10:56992800-56993200	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr10:56993000-56993400	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr10:56993000-56993600	Active TSS	Liver	Liver
13	chr10:56998800-56999800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:56999200-56999600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:56999200-57000000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:56999800-57002200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:57002000-57002800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr10:57002200-57002800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr10:57002400-57003200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:57005400-57005600	Enhancers	HUVEC	blood vessel
21	chr10:57005600-57005800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:57005600-57006000	Active TSS	Colonic Mucosa	Colon
23	chr10:57005600-57006000	Enhancers	Ovary	ovary
24	chr10:57005600-57006000	Flanking Active TSS	HUVEC	blood vessel
25	chr10:57005600-57006200	Active TSS	Stomach Smooth Muscle	stomach
26	chr10:57005600-57006200	Active TSS	NHDF-Ad	bronchial
27	chr10:57005600-57006400	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr10:57005800-57006200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
29	chr10:57006000-57006400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:57006000-57006400	Active TSS	HUVEC	blood vessel
31	chr10:57006200-57007200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr10:57006800-57007600	Enhancers	Fetal Lung	lung
33	chr10:57007200-57007400	Enhancers	Stomach Smooth Muscle	stomach

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