Variant report

Variant	nsv551038
Chromosome Location	chr10:57089420-57164148
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:57128438..57131267-chr10:57136615..57139314,2	K562	blood:
2	chr10:57077687..57079914-chr10:57092227..57093981,2	K562	blood:
3	chr10:57128438..57131267-chr10:57136615..57139314,2	K562	blood:
4	chr10:57154707..57155371-chr10:83749526..83750393,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZWINT-4	chr10:57125852-57125973	ENSG00000236744.2
2	lnc-ZWINT-4	chr10:57125852-57125973	ENSG00000236744.1

No data

Variant related genes	Relation type
ENSG00000150275	chromatin interactions

Extended variants
information (count: 1423 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:1423 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142672151	chr10:57090606-57090607	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs376998966	chr10:57090627-57090628	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs56865725	chr10:57090629-57090630	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs201819539	chr10:57090630-57090631	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs145064968	chr10:57090680-57090681	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs529857750	chr10:57090703-57090704	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs377535078	chr10:57090728-57090729	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs540173391	chr10:57090774-57090775	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs570599205	chr10:57090783-57090784	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs58161140	chr10:57090785-57090786	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs182265909	chr10:57090800-57090801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs187141206	chr10:57090824-57090825	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs368708259	chr10:57090986-57090987	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs7910769	chr10:57091070-57091071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs60237161	chr10:57091121-57091122	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs547832786	chr10:57091140-57091141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs551818451	chr10:57091165-57091166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs59363842	chr10:57091186-57091187	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs377086436	chr10:57091204-57091205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs191146287	chr10:57091224-57091225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs567180537	chr10:57091240-57091241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs146809110	chr10:57091319-57091320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs559032345	chr10:57091324-57091325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs7922055	chr10:57091360-57091361	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs200747971	chr10:57091381-57091382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs555855003	chr10:57091393-57091394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs140331674	chr10:57091438-57091439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs555066957	chr10:57091439-57091440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs74978472	chr10:57091446-57091447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs150348029	chr10:57091464-57091465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs567737793	chr10:57091504-57091505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs571906359	chr10:57091521-57091522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs560075559	chr10:57091556-57091557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs577110864	chr10:57091562-57091563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs116207859	chr10:57091639-57091640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs138114464	chr10:57091655-57091656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs537421762	chr10:57091660-57091661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs531166423	chr10:57091662-57091663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs149538055	chr10:57091743-57091744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs561793899	chr10:57091746-57091747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs182296245	chr10:57091848-57091849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs187327803	chr10:57091876-57091877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs534951270	chr10:57091943-57091944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs547204859	chr10:57091953-57091954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs566941239	chr10:57091971-57091972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs201704379	chr10:57091974-57091975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs369896382	chr10:57091975-57091976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs113311663	chr10:57092012-57092013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs115165067	chr10:57092068-57092069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs578211273	chr10:57092112-57092113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57090600-57091000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:57091000-57094800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:57094800-57096800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr10:57096400-57097200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:57108400-57109000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:57108600-57109000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:57111000-57111800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:57111000-57112400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:57111200-57111600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:57111200-57111800	Enhancers	Brain Germinal Matrix	brain
11	chr10:57111400-57111800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:57116600-57116800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:57116800-57117800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:57117800-57119800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:57125000-57125600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:57125600-57129800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:57128400-57132600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:57128800-57130800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:57129400-57130400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:57129400-57130600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:57129600-57130800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:57129800-57130200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:57130200-57130800	Enhancers	NHDF-Ad	bronchial
24	chr10:57130800-57133400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:57130800-57134600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:57130800-57135400	Weak transcription	NHDF-Ad	bronchial
27	chr10:57132600-57134000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:57133400-57135600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr10:57134000-57134600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:57134000-57135800	Enhancers	HUVEC	blood vessel
31	chr10:57134600-57134800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:57134600-57135000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:57134800-57135000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:57135000-57135200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:57135000-57135200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:57135200-57135400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:57135200-57135400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:57135200-57135600	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr10:57135400-57135600	Enhancers	NHDF-Ad	bronchial
40	chr10:57135400-57136800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:57135600-57140200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:57136800-57137800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:57138400-57138600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:57140200-57142800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr10:57140400-57140800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:57147200-57147600	Enhancers	Fetal Heart	heart
47	chr10:57147400-57148000	Enhancers	Fetal Brain Female	brain
48	chr10:57153400-57153600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:57153600-57157600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:57154200-57155400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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