Variant report

Variant	nsv551056
Chromosome Location	chr10:57841516-57966330
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:57859224..57862107-chr10:57868320..57870697,2	K562	blood:
2	chr10:57859224..57862107-chr10:57868320..57870697,2	K562	blood:
3	chr10:57930488..57932712-chr10:57934430..57936445,2	K562	blood:
4	chr10:57909018..57911218-chr10:57914611..57917570,2	K562	blood:
5	chr10:57748719..57749535-chr10:57876195..57877022,4	MCF-7	breast:
6	chr10:57909018..57911218-chr10:57914611..57917570,2	K562	blood:
7	chr10:57747558..57749260-chr10:57921516..57923175,2	MCF-7	breast:
8	chr10:57927604..57930485-chr10:57936536..57938322,2	K562	blood:
9	chr10:57930488..57932712-chr10:57934430..57936445,2	K562	blood:
10	chr10:57927604..57930485-chr10:57936536..57938322,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZWINT-1	chr10:57914592-57914605	FPKM1_group_3344_transcript_1
2	lnc-ZWINT-1	chr10:57911541-57911756	NONHSAT013466
3	lnc-ZWINT-1	chr10:57911542-57911756	XLOC_008828
4	lnc-ZWINT-1	chr10:57911541-57911756	FPKM1_group_3344_transcript_1
5	lnc-ZWINT-1	chr10:57914593-57914731	XLOC_008828
6	lnc-ZWINT-1	chr10:57914592-57914731	NONHSAT013466

No data

Variant related genes	Relation type
TAF5L	miRNA target sites

Extended variants
information (count: 1111 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:1111 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10763312	chr10:57841516-57841517	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs539753641	chr10:57841524-57841525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs573737456	chr10:57841536-57841537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs10565291	chr10:57841540-57841541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs370297354	chr10:57841543-57841544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs183654093	chr10:57841551-57841552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs115468824	chr10:57841571-57841572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs535227774	chr10:57841580-57841581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs555053209	chr10:57841652-57841653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs571852861	chr10:57841679-57841680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs540726103	chr10:57841721-57841722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs564138533	chr10:57841769-57841770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs76427656	chr10:57841802-57841803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs374027095	chr10:57841808-57841809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs546496156	chr10:57841845-57841846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs562991684	chr10:57841969-57841970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs188137398	chr10:57842022-57842023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs531948508	chr10:57842030-57842031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs58200063	chr10:57842053-57842054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs200199511	chr10:57842058-57842059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs548837997	chr10:57842064-57842065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs11005207	chr10:57842085-57842086	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs145672394	chr10:57842100-57842101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs114078071	chr10:57842120-57842121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs547556446	chr10:57842163-57842164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs181322299	chr10:57842166-57842167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs545440492	chr10:57842167-57842168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs539423456	chr10:57842178-57842179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs550053948	chr10:57842215-57842216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs112404446	chr10:57842252-57842253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs148450098	chr10:57842255-57842256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs142635170	chr10:57842276-57842277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs571890316	chr10:57842285-57842286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs376551217	chr10:57842287-57842288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs532306966	chr10:57842288-57842289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs147579857	chr10:57842289-57842290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs9416461	chr10:57842297-57842298	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs543008474	chr10:57842326-57842327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs9416462	chr10:57842349-57842350	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs576852436	chr10:57842405-57842406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs542519771	chr10:57842436-57842437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs375700666	chr10:57842437-57842438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs74136908	chr10:57842450-57842451	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs527852627	chr10:57842474-57842475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs144155403	chr10:57842487-57842488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs147774655	chr10:57842491-57842492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs186443161	chr10:57842495-57842496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs140136011	chr10:57842511-57842512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs190098470	chr10:57842545-57842546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs535391373	chr10:57842573-57842574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	17426248	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Chronic lymphocytic leukemia	21546498	CNVD

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57826600-57850600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:57843600-57844800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:57843600-57844800	Enhancers	Ovary	ovary
4	chr10:57844800-57846000	Weak transcription	Ovary	ovary
5	chr10:57846000-57846200	Enhancers	Ovary	ovary
6	chr10:57850600-57851400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:57850800-57851400	Enhancers	Liver	Liver
8	chr10:57851400-57855000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:57853400-57854000	Enhancers	HepG2	liver
10	chr10:57855000-57855800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:57855000-57856200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:57855200-57855600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:57855200-57856000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:57855400-57856000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:57855400-57856000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:57855600-57855800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr10:57857200-57858000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr10:57857400-57858000	Enhancers	Brain Germinal Matrix	brain
19	chr10:57857800-57858000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr10:57897000-57897400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr10:57901200-57901400	Enhancers	GM12878-XiMat	blood
22	chr10:57901400-57901600	Flanking Active TSS	GM12878-XiMat	blood
23	chr10:57901600-57902200	Active TSS	GM12878-XiMat	blood
24	chr10:57902200-57902600	Flanking Active TSS	GM12878-XiMat	blood
25	chr10:57902600-57902800	Enhancers	GM12878-XiMat	blood
26	chr10:57906800-57907000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:57914600-57915200	Active TSS	H1 Cell Line	embryonic stem cell
28	chr10:57915000-57915400	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr10:57915000-57915400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr10:57920200-57920600	Enhancers	Brain Germinal Matrix	brain
31	chr10:57923000-57924400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:57924400-57924600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr10:57934600-57935000	Active TSS	Ovary	ovary
34	chr10:57934600-57935200	Active TSS	Right Ventricle	heart
35	chr10:57934600-57935400	Enhancers	Fetal Heart	heart
36	chr10:57935400-57937400	Weak transcription	Fetal Heart	heart
37	chr10:57937400-57938400	Enhancers	Fetal Brain Female	brain
38	chr10:57937400-57939600	Enhancers	Fetal Heart	heart
39	chr10:57945600-57946000	Enhancers	H9 Cell Line	embryonic stem cell
40	chr10:57945600-57946000	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr10:57945800-57946400	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr10:57945800-57946400	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr10:57946000-57946200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr10:57946000-57946400	Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr10:57946000-57946400	Active TSS	H9 Cell Line	embryonic stem cell
46	chr10:57946200-57946600	Active TSS	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links