Variant report

Variant	nsv551059
Chromosome Location	chr10:58052682-58091594
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:58074309..58076472-chr10:58119158..58121235,2	K562	blood:
2	chr10:58074675..58076472-chr10:58119735..58122663,2	K562	blood:
3	chr10:58090922..58092444-chr10:58109812..58112754,2	K562	blood:
4	chr10:58084297..58086595-chr10:58097491..58099883,2	K562	blood:
5	chr10:58080372..58083285-chr10:58105351..58107829,2	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTRNR2L5-3	chr10:58072827-58073281	XLOC_008486
2	lnc-MTRNR2L5-3	chr10:58062673-58062823	XLOC_008486
3	lnc-MTRNR2L5-3	chr10:58058949-58059214	XLOC_008486
4	lnc-MTRNR2L5-3	chr10:58072022-58072249	XLOC_008486
5	lnc-MTRNR2L5-3	chr10:58058712-58059214	NONHSAT013468
6	lnc-MTRNR2L5-3	chr10:58062672-58062823	NONHSAT013468
7	lnc-MTRNR2L5-3	chr10:58072021-58072249	NONHSAT013468
8	lnc-MTRNR2L5-3	chr10:58072826-58074528	NONHSAT013468

No data

Variant related genes	Relation type
ENSG00000122952	chromatin interactions

Extended variants
information (count: 316 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:316 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs149516470	chr10:58058797-58058798	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs77059361	chr10:58058870-58058871	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs116139632	chr10:58058879-58058880	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs114471953	chr10:58058883-58058884	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs112050867	chr10:58058895-58058896	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs536498220	chr10:58058929-58058930	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs540528508	chr10:58058939-58058940	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs183459313	chr10:58058951-58058952	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs75700859	chr10:58058964-58058965	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs75023813	chr10:58058985-58058986	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs79507361	chr10:58059020-58059021	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs116982362	chr10:58059025-58059026	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs34310472	chr10:58059026-58059027	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs560099611	chr10:58059029-58059030	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs34686756	chr10:58059068-58059069	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs575601782	chr10:58059069-58059070	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs544269296	chr10:58059095-58059096	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs4281417	chr10:58059170-58059171	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs556374019	chr10:58060836-58060837	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs181376354	chr10:58060852-58060853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs554200590	chr10:58060905-58060906	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs12571653	chr10:58060921-58060922	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs115773155	chr10:58060940-58060941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs571784511	chr10:58060941-58060942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs540022708	chr10:58060973-58060974	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs186303594	chr10:58060980-58060981	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs7895638	chr10:58060996-58060997	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs532913578	chr10:58061032-58061033	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs190353520	chr10:58061067-58061068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs563157197	chr10:58061162-58061163	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs531983321	chr10:58061174-58061175	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs368927119	chr10:58061185-58061186	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs375904101	chr10:58061206-58061207	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs528787891	chr10:58061226-58061227	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs373807106	chr10:58061272-58061273	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs16908662	chr10:58061289-58061290	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs111231610	chr10:58061301-58061302	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs371555345	chr10:58061308-58061309	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs151326613	chr10:58061313-58061314	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs181085307	chr10:58061341-58061342	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs79372438	chr10:58061344-58061345	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs576267245	chr10:58061407-58061408	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs535314275	chr10:58061429-58061430	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs185875779	chr10:58061449-58061450	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs571869338	chr10:58061494-58061495	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs76605781	chr10:58061574-58061575	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs558832244	chr10:58061579-58061580	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs557806825	chr10:58061587-58061588	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs533458101	chr10:58062694-58062695	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs549968586	chr10:58062699-58062700	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58060800-58061600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:58074600-58078600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:58076000-58079600	Enhancers	HMEC	breast
4	chr10:58076400-58079400	Enhancers	NHEK	skin
5	chr10:58076600-58078000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:58076600-58079200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:58078000-58078400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:58078400-58079400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:58078400-58079400	Enhancers	GM12878-XiMat	blood

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