Variant report

Variant	nsv551108
Chromosome Location	chr10:58870687-58918899
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:58887742..58890502-chr10:58913371..58916213,2	MCF-7	breast:
2	chr10:58885374..58887771-chr10:58890005..58892664,2	MCF-7	breast:
3	chr10:58887742..58890502-chr10:58913371..58916213,2	MCF-7	breast:
4	chr10:58885374..58887771-chr10:58890005..58892664,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZWINT-3	chr10:58872623-58873152	XLOC_008830

Variant related genes	Relation type
C22orf13	miRNA target sites

Extended variants
information (count: 1706 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:1706 , 50 per page) page: 1 2 3 4 5 6 7 ... 35

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2174231	chr10:58870687-58870688	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs562990746	chr10:58870729-58870730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs111280834	chr10:58870762-58870763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs147223953	chr10:58870774-58870775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs7900777	chr10:58870825-58870826	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs187943158	chr10:58870863-58870864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs548211267	chr10:58870919-58870920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs563245619	chr10:58870922-58870923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs12253650	chr10:58870927-58870928	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs190464849	chr10:58871001-58871002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs534515181	chr10:58871027-58871028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs12253767	chr10:58871052-58871053	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs144474518	chr10:58871127-58871128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs71465098	chr10:58871134-58871135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs376360342	chr10:58871143-58871144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs568277231	chr10:58871186-58871187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs183020990	chr10:58871202-58871203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs79559366	chr10:58871218-58871219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs187643258	chr10:58871221-58871222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs924794	chr10:58871269-58871270	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs140466491	chr10:58871330-58871331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs35211313	chr10:58871354-58871355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs397846803	chr10:58871358-58871359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs924793	chr10:58871363-58871364	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs142810025	chr10:58871445-58871446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs114343711	chr10:58871502-58871503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs191718834	chr10:58871511-58871512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs147366064	chr10:58871519-58871520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs73286547	chr10:58871611-58871612	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs530498465	chr10:58871699-58871700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs113088681	chr10:58871714-58871715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs10159783	chr10:58871750-58871751	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs10159826	chr10:58871763-58871764	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs373529766	chr10:58871766-58871767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs528151580	chr10:58871792-58871793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs569241087	chr10:58871798-58871799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs369584451	chr10:58871800-58871801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs535377915	chr10:58871821-58871822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs12254231	chr10:58871828-58871829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs149377010	chr10:58871887-58871888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs113700026	chr10:58871890-58871891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs539435962	chr10:58871904-58871905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs34732397	chr10:58871945-58871946	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs573260002	chr10:58871980-58871981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs534271690	chr10:58871987-58871988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs555696638	chr10:58872001-58872002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs187757190	chr10:58872018-58872019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs544949876	chr10:58872024-58872025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs34190074	chr10:58872055-58872056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs397846903	chr10:58872061-58872062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164919	CNVD
Glioma	20126413	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58863200-58879400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:58868600-58878000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:58873000-58873800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:58878000-58880400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:58879200-58879800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:58879200-58880000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr10:58879400-58879800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:58879800-58883000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:58880400-58885400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:58885400-58886600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:58886600-58897200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:58893000-58893200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:58893000-58894400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:58893200-58893400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:58893200-58893400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr10:58893200-58893600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
17	chr10:58893200-58893600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr10:58893200-58893600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr10:58893200-58894400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:58894400-58894600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:58895400-58895800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:58897200-58898000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:58898000-58899000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:58899000-58899800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:58899800-58902000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:58902000-58902800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:58902000-58903600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:58902400-58903400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:58902600-58903400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr10:58902800-58903200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:58903200-58903400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
32	chr10:58903200-58903400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:58903600-58906800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:58906800-58907200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:58907200-58907400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:58907400-58907800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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