Variant report

Variant	nsv551117
Chromosome Location	chr10:58938552-59007742
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:58978500..58980701-chr10:58984657..58986549,2	MCF-7	breast:
2	chr10:58957814..58958334-chr4:116457976..116458496,2	MCF-7	breast:
3	chr10:58978500..58980701-chr10:58984657..58986549,2	MCF-7	breast:
4	chr10:58975934..58977805-chr10:58980347..58981945,2	K562	blood:
5	chr10:58964683..58966262-chr10:58967768..58970622,2	K562	blood:
6	chr10:58983000..58985770-chr10:58990490..58992498,2	K562	blood:
7	chr10:58981686..58984044-chr10:59073048..59074981,2	MCF-7	breast:
8	chr10:58964683..58966262-chr10:58967768..58970622,2	K562	blood:
9	chr10:58983000..58985770-chr10:58990490..58992498,2	K562	blood:
10	chr10:58975934..58977805-chr10:58980347..58981945,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZWINT-3	chr10:58982372-58982557	XLOC_008830

No data

Variant related genes	Relation type
C2orf29	miRNA target sites

Extended variants
information (count: 2291 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:2291 , 50 per page) page: 1 2 3 4 5 6 7 ... 46

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6481257	chr10:58938552-58938553	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs566813109	chr10:58938603-58938604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs188726988	chr10:58938614-58938615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs143218604	chr10:58938620-58938621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs150844154	chr10:58938625-58938626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs201280174	chr10:58938626-58938627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs140346799	chr10:58938633-58938634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs567797245	chr10:58938641-58938642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs10690398	chr10:58938643-58938644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs555485578	chr10:58938647-58938648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs72801956	chr10:58938704-58938705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs397956385	chr10:58938720-58938721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs142754911	chr10:58938729-58938730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs140966658	chr10:58938731-58938732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs145078107	chr10:58938732-58938733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs371463089	chr10:58938735-58938736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs373929847	chr10:58938736-58938737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs116304225	chr10:58938739-58938740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs6481258	chr10:58938741-58938742	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs146826806	chr10:58938744-58938745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs143207854	chr10:58938748-58938749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs143527695	chr10:58938773-58938774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs140016405	chr10:58938778-58938779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs150981839	chr10:58938780-58938781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs180853983	chr10:58938784-58938785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs146918535	chr10:58938786-58938787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs141965234	chr10:58938799-58938800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs578212263	chr10:58938827-58938828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs6481259	chr10:58938884-58938885	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs72801960	chr10:58938900-58938901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs144165321	chr10:58938910-58938911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs201676230	chr10:58938914-58938915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs76705583	chr10:58938929-58938930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs370145688	chr10:58938934-58938935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs371514207	chr10:58938964-58938965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs545616884	chr10:58938982-58938983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs192187398	chr10:58938990-58938991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs183961178	chr10:58939000-58939001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs185952188	chr10:58939017-58939018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs561802854	chr10:58939049-58939050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs7915950	chr10:58939059-58939060	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs140738290	chr10:58939101-58939102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs7912607	chr10:58939126-58939127	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs150620014	chr10:58939144-58939145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs182514189	chr10:58939151-58939152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs150305295	chr10:58939164-58939165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs187173997	chr10:58939171-58939172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs78398317	chr10:58939191-58939192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs549048552	chr10:58939196-58939197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs567447505	chr10:58939201-58939202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:175 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58930200-58959200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:58933000-58947200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:58945800-58946200	Enhancers	Fetal Kidney	kidney
4	chr10:58945800-58946400	Enhancers	Fetal Lung	lung
5	chr10:58947800-58949200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:58952400-58968400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:58959000-58960000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:58959200-58960200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:58960200-58966600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:58963600-58963800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:58963800-58970000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:58966600-58967400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:58967400-58970600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:58968400-58969200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:58969200-58970800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:58970000-58973400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr10:58970600-58971000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:58970600-58972200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr10:58970800-58971200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:58970800-58972200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
21	chr10:58971000-58972600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
22	chr10:58971200-58972000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:58971400-58972000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:58972000-58972800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:58972000-58978800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:58972600-58977400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:58972800-58973400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:58973400-58976000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:58973600-58973800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:58973600-58973800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
31	chr10:58973800-58974200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:58973800-58977600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:58974200-58977600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:58975800-58980800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:58976000-58976600	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr10:58976200-58976400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:58976200-58976400	Enhancers	H9 Cell Line	embryonic stem cell
38	chr10:58976400-58977600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:58976400-58977600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:58976600-58977200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:58976600-58982000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr10:58977200-58980400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr10:58977400-58979800	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr10:58977600-58977800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:58977600-58977800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:58977600-58978000	Enhancers	H1 Cell Line	embryonic stem cell
47	chr10:58977600-58978000	Enhancers	H9 Cell Line	embryonic stem cell
48	chr10:58977600-58978200	Enhancers	Placenta	Placenta
49	chr10:58977600-58978400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:58977600-58978600	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links