Variant report

Variant	nsv551846
Chromosome Location	chr10:90932935-90964026
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90807595..90810361-chr10:90944518..90946449,2	MCF-7	breast:

Extended variants
information (count: 742 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:742 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9651424	chr10:90932935-90932936	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs544980785	chr10:90933017-90933018	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs192233734	chr10:90933128-90933129	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs538200661	chr10:90933139-90933140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs75959435	chr10:90933161-90933162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs140646820	chr10:90933220-90933221	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs549246202	chr10:90933255-90933256	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs144438579	chr10:90933298-90933299	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs67979465	chr10:90933336-90933337	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550865329	chr10:90933337-90933338	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs398075397	chr10:90933347-90933348	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs537873699	chr10:90933348-90933349	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs200320959	chr10:90933349-90933350	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs531449586	chr10:90933356-90933357	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs182581690	chr10:90933398-90933399	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs551946058	chr10:90933416-90933417	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs372415011	chr10:90933417-90933418	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs150952452	chr10:90933469-90933470	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs9651425	chr10:90933480-90933481	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs538586268	chr10:90933560-90933561	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs547067631	chr10:90933597-90933598	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs567196885	chr10:90933603-90933604	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs534590704	chr10:90933650-90933651	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs188384161	chr10:90933683-90933684	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs564280472	chr10:90933699-90933700	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs555577997	chr10:90933705-90933706	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs72814703	chr10:90933754-90933755	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs567595179	chr10:90933768-90933769	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs375740018	chr10:90933776-90933777	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs540724329	chr10:90933787-90933788	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs536144998	chr10:90933827-90933828	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs537973358	chr10:90933832-90933833	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs192263953	chr10:90933930-90933931	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs577968511	chr10:90933988-90933989	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs140803065	chr10:90934026-90934027	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs368201401	chr10:90934084-90934085	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs150085366	chr10:90934100-90934101	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs553236540	chr10:90934126-90934127	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs368365717	chr10:90934131-90934132	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs2902445	chr10:90934154-90934155	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs529274476	chr10:90934185-90934186	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs116407341	chr10:90934201-90934202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs75700577	chr10:90934247-90934248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs561088454	chr10:90934331-90934332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs531485851	chr10:90934335-90934336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs549910658	chr10:90934336-90934337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs184649319	chr10:90934348-90934349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs538759387	chr10:90934349-90934350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs73368228	chr10:90934351-90934352	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs145439468	chr10:90934402-90934403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Type 2 diabetes	21526130	CNVD
Breast cancer	22522925	CNVD
T-cell lymphomas	22341440	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90931200-90933000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr10:90931200-90933200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:90931200-90933200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:90931200-90933200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:90931200-90933400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:90931400-90933200	Enhancers	HMEC	breast
7	chr10:90931600-90933000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:90931600-90933000	Enhancers	NHEK	skin
9	chr10:90931800-90933000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:90931800-90933800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:90932000-90933000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:90932000-90933200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:90932000-90933400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:90932000-90933400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:90932200-90933200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:90932400-90933000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:90932400-90933200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr10:90932400-90933200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr10:90932400-90933600	Enhancers	Osteobl	bone
20	chr10:90932600-90933200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:90932600-90933200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:90932600-90933200	Enhancers	Hela-S3	cervix
23	chr10:90932600-90933200	Enhancers	HUVEC	blood vessel
24	chr10:90932800-90933200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:90932800-90934200	Enhancers	NHDF-Ad	bronchial
26	chr10:90933000-90933200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr10:90933000-90933200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:90933000-90933400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:90933200-90935400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:90933200-90935600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:90934200-90935400	Weak transcription	NHDF-Ad	bronchial
32	chr10:90935400-90936200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:90935400-90936200	Enhancers	NHDF-Ad	bronchial
34	chr10:90935600-90936400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:90935800-90936000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:90935800-90936000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:90936000-90936200	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr10:90936200-90940200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:90936200-90942800	Weak transcription	NHDF-Ad	bronchial
40	chr10:90940200-90940600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:90940600-90943000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:90942600-90943800	Enhancers	NHLF	lung
43	chr10:90942600-90944000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:90942800-90944000	Enhancers	NHDF-Ad	bronchial
45	chr10:90943000-90943800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:90943000-90944200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:90943200-90944400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:90943400-90943800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:90943600-90943800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:90943600-90944000	Enhancers	HMEC	breast

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