Variant report

Variant	nsv551877
Chromosome Location	chr10:91744865-91776003
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 658 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:658 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4301707	chr10:91744865-91744866	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs11185946	chr10:91744898-91744899	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs35618798	chr10:91745064-91745065	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs151187855	chr10:91745068-91745069	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs535676221	chr10:91745082-91745083	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs36055383	chr10:91745085-91745086	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs74401792	chr10:91745094-91745095	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs569073090	chr10:91745105-91745106	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs76827558	chr10:91745139-91745140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs534615117	chr10:91745150-91745151	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs140998281	chr10:91745202-91745203	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs577663601	chr10:91745218-91745219	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs12250259	chr10:91745272-91745273	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs540225242	chr10:91745334-91745335	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs557721332	chr10:91745350-91745351	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs553874047	chr10:91745351-91745352	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs150208410	chr10:91745365-91745366	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs192778563	chr10:91745369-91745370	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs12265070	chr10:91745373-91745374	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs182468857	chr10:91745426-91745427	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs139037743	chr10:91745427-91745428	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs565430487	chr10:91745459-91745460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs532990919	chr10:91745498-91745499	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs546599027	chr10:91745559-91745560	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs80071588	chr10:91745565-91745566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs189231650	chr10:91745571-91745572	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs186588271	chr10:91752001-91752002	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs10881722	chr10:91752028-91752029	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs529120456	chr10:91752032-91752033	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs147670457	chr10:91752042-91752043	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs569152518	chr10:91752064-91752065	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs201710171	chr10:91752065-91752066	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs12266023	chr10:91752102-91752103	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs7084696	chr10:91752111-91752112	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs571345386	chr10:91752186-91752187	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs35298215	chr10:91752196-91752197	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs531620728	chr10:91752257-91752258	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs533914201	chr10:91752258-91752259	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs149126631	chr10:91752336-91752337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs191442792	chr10:91752362-91752363	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs560241500	chr10:91752397-91752398	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs536874317	chr10:91752408-91752409	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs113311295	chr10:91752439-91752440	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs556435187	chr10:91752464-91752465	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs374716338	chr10:91752485-91752486	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs7070718	chr10:91752552-91752553	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs530114636	chr10:91759816-91759817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs547133521	chr10:91759820-91759821	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs10881728	chr10:91759842-91759843	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs532613012	chr10:91759869-91759870	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91742800-91745000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:91745000-91745600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:91752000-91752600	Enhancers	GM12878-XiMat	blood
4	chr10:91759800-91760600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:91760000-91761000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:91760400-91761000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:91760600-91760800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:91760600-91761400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:91760800-91766400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:91761400-91761600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:91765000-91765200	Enhancers	Small Intestine	intestine
12	chr10:91766400-91766800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:91766400-91768400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:91766400-91768400	Enhancers	HMEC	breast
15	chr10:91766400-91768400	Enhancers	NHEK	skin
16	chr10:91766600-91768400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:91766800-91767800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:91767000-91767200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:91767000-91767800	Enhancers	NH-A	brain
20	chr10:91767000-91768000	Enhancers	Osteobl	bone
21	chr10:91767200-91770200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:91767800-91768400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:91768400-91770400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:91768400-91770400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:91770400-91770600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:91770400-91770800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:91770400-91771200	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr10:91770600-91771200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr10:91770600-91771200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
30	chr10:91770800-91771000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr10:91770800-91771000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
32	chr10:91770800-91771200	Active TSS	H9 Cell Line	embryonic stem cell
33	chr10:91770800-91771200	Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr10:91770800-91810400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:91771000-91771200	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr10:91771000-91771200	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr10:91775400-91776400	Enhancers	GM12878-XiMat	blood

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