Variant report

Variant	nsv551882
Chromosome Location	chr10:92090785-92598823
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2739)
CpG islands
(count:796)
Chromatin interactive
region (count:56)
LncRNA
region (count:52)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2739 , 50 per page) page: 1 2 3 4 5 6 7 ... 55

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:92547727-92547927	HepG2	liver:	n/a	n/a
2	ARID3A	chr10:92560192-92560722	K562	blood:	n/a	n/a
3	ARID3A	chr10:92547661-92547976	K562	blood:	n/a	n/a
4	ATF2	chr10:92180364-92180842	GM12878	blood:	n/a	n/a
5	ATF2	chr10:92492304-92492749	GM12878	blood:	n/a	n/a
6	ATF3	chr10:92539348-92539659	GM12878	blood:	n/a	n/a
7	ATF3	chr10:92539382-92539620	K562	blood:	n/a	n/a
8	BACH1	chr10:92537699-92537707	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr10:92184912-92184933	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr10:92388133-92388292	H1-hESC	embryonic stem cell:	n/a	n/a
11	BATF	chr10:92505731-92505928	GM12878	blood:	n/a	n/a
12	BATF	chr10:92558338-92558561	GM12878	blood:	n/a	n/a
13	BATF	chr10:92492326-92492718	GM12878	blood:	n/a	n/a
14	BATF	chr10:92492406-92492747	GM12878	blood:	n/a	n/a
15	BATF	chr10:92180389-92180682	GM12878	blood:	n/a	n/a
16	BATF	chr10:92180437-92180697	GM12878	blood:	n/a	n/a
17	BCL11A	chr10:92123906-92124192	H1-hESC	embryonic stem cell:	n/a	n/a
18	BCL11A	chr10:92535135-92535366	GM12878	blood:	n/a	n/a
19	BCL11A	chr10:92180396-92180743	GM12878	blood:	n/a	n/a
20	BCL11A	chr10:92180394-92180720	GM12878	blood:	n/a	n/a
21	BCL3	chr10:92140213-92140457	GM12878	blood:	n/a	n/a
22	BHLHE40	chr10:92511235-92511397	GM12878	blood:	n/a	n/a
23	BHLHE40	chr10:92547746-92547983	GM12878	blood:	n/a	n/a
24	BHLHE40	chr10:92511289-92511317	K562	blood:	n/a	n/a
25	BHLHE40	chr10:92492381-92492717	GM12878	blood:	n/a	n/a
26	BHLHE40	chr10:92112120-92112285	GM12878	blood:	n/a	n/a
27	BHLHE40	chr10:92197207-92197414	GM12878	blood:	n/a	n/a
28	BHLHE40	chr10:92539360-92539757	K562	blood:	n/a	n/a
29	BRCA1	chr10:92492627-92492628	Hela-S3	cervix:	n/a	n/a
30	BRCA1	chr10:92511184-92511518	Hela-S3	cervix:	n/a	n/a
31	CBX3	chr10:92166724-92167371	HCT-116	colon:	n/a	n/a
32	CBX3	chr10:92346380-92348452	HCT-116	colon:	n/a	n/a
33	CBX3	chr10:92339367-92340016	HCT-116	colon:	n/a	n/a
34	CBX3	chr10:92210988-92211708	HCT-116	colon:	n/a	n/a
35	CBX3	chr10:92339282-92340123	HCT-116	colon:	n/a	n/a
36	CBX3	chr10:92346576-92347631	HCT-116	colon:	n/a	n/a
37	CEBPB	chr10:92100099-92100238	HepG2	liver:	n/a	chr10:92100183-92100194
38	CEBPB	chr10:92318692-92318720	HepG2	liver:	n/a	chr10:92318702-92318713
39	CEBPB	chr10:92222573-92222707	K562	blood:	n/a	chr10:92222653-92222664
40	CEBPB	chr10:92222493-92222842	IMR90	lung:	n/a	chr10:92222653-92222664
41	CEBPB	chr10:92410784-92410999	HepG2	liver:	n/a	chr10:92410937-92410948
42	CEBPB	chr10:92176813-92177155	HepG2	liver:	n/a	chr10:92176960-92176971
43	CEBPB	chr10:92537352-92537698	HepG2	liver:	n/a	chr10:92537528-92537539 chr10:92537530-92537541 chr10:92537530-92537539 chr10:92537530-92537539 chr10:92537530-92537539 chr10:92537530-92537539 chr10:92537528-92537541 chr10:92537528-92537541 chr10:92537530-92537541
44	CEBPB	chr10:92482117-92482918	Hela-S3	cervix:	n/a	chr10:92482778-92482789 chr10:92482350-92482361
45	CEBPB	chr10:92166813-92167244	MCF-7	breast:	n/a	n/a
46	CEBPB	chr10:92539361-92539684	A549	lung:	n/a	chr10:92539496-92539507
47	CEBPB	chr10:92176846-92177165	MCF-7	breast:	n/a	chr10:92176960-92176971
48	CEBPB	chr10:92218923-92219095	A549	lung:	n/a	n/a
49	CEBPB	chr10:92401949-92402268	IMR90	lung:	n/a	chr10:92402107-92402120
50	CEBPB	chr10:92346495-92347641	HCT-116	colon:	n/a	n/a

(count:796 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:92575878-92575928	BE2_C	brain:	n/a
2	chr10:92493105-92493155	GM12878	blood:	n/a
3	chr10:92493105-92493155	U87	brain:	n/a
4	chr10:92575878-92575928	BE2_C	brain:	n/a
5	chr10:92493105-92493155	GM12878	blood:	n/a
6	chr10:92493105-92493155	U87	brain:	n/a
7	chr10:92591168-92591218	SAEC	small airway:	n/a
8	chr10:92501798-92501848	SK-N-MC	brain:	n/a
9	chr10:92213236-92213286	GM12892	blood:	n/a
10	chr10:92123669-92123719	HNPCEpiC	eye:	n/a
11	chr10:92123669-92123719	HCM	heart:	n/a
12	chr10:92591140-92591190	HCPEpiC	choroid plexus:	n/a
13	chr10:92591140-92591190	U87	brain:	n/a
14	chr10:92484088-92484138	HPAEpiC	pulmonary alveolar:	n/a
15	chr10:92501798-92501848	HNPCEpiC	eye:	n/a
16	chr10:92548822-92548872	Hela-S3	cervix:	n/a
17	chr10:92395206-92395256	AoSMC	blood vessel:	n/a
18	chr10:92153495-92153545	IMR90	lung:	fetal
19	chr10:92123669-92123719	AG04449	skin:	fetal
20	chr10:92123669-92123719	LNCaP	prostate:	n/a
21	chr10:92395206-92395256	AG04450	lung:	fetal
22	chr10:92123669-92123719	HRE	kidney:	n/a
23	chr10:92484088-92484138	HRCEpiC	kidney:	n/a
24	chr10:92153495-92153545	SK-N-MC	brain:	n/a
25	chr10:92123669-92123719	Hela-S3	cervix:	n/a
26	chr10:92493105-92493155	HCPEpiC	choroid plexus:	n/a
27	chr10:92123669-92123719	HepG2	liver:	n/a
28	chr10:92565207-92565257	HRPEpiC	eye:	n/a
29	chr10:92591168-92591218	PANC-1	pancreas:	n/a
30	chr10:92548822-92548872	HL-60	blood:	n/a
31	chr10:92493105-92493155	Caco-2	colon:	n/a
32	chr10:92548822-92548872	PrEC	prostate:	n/a
33	chr10:92548822-92548872	MCF10A-Er-Src	breast:	n/a
34	chr10:92123669-92123719	HPAEpiC	pulmonary alveolar:	n/a
35	chr10:92591140-92591190	HCF	heart:	n/a
36	chr10:92123669-92123719	ProgFib	skin:	n/a
37	chr10:92548822-92548872	HCM	heart:	n/a
38	chr10:92395206-92395256	PrEC	prostate:	n/a
39	chr10:92591168-92591218	NB4	blood:	n/a
40	chr10:92153495-92153545	HRPEpiC	eye:	n/a
41	chr10:92213389-92213439	IMR90	lung:	fetal
42	chr10:92484088-92484138	MCF10A-Er-Src	breast:	n/a
43	chr10:92565207-92565257	HMEC	breast:	n/a
44	chr10:92565207-92565257	AG10803	skin:	n/a
45	chr10:92591140-92591190	H1-hESC	embryonic stem cell:	embryo
46	chr10:92123669-92123719	GM12878	blood:	n/a
47	chr10:92395206-92395256	NB4	blood:	n/a
48	chr10:92493105-92493155	HEK293	kidney:	embryo
49	chr10:92591168-92591218	Caco-2	colon:	n/a
50	chr10:92591140-92591190	HPAEpiC	pulmonary alveolar:	n/a

(count:56 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr10:92437999..92438515-chr10:92472507..92473297,2	MCF-7	breast:
2	chr10:91907918..91908914-chr10:92477743..92478315,2	MCF-7	breast:
3	chr10:91908037..91908636-chr10:92339006..92340002,2	MCF-7	breast:
4	chr10:92510928..92512332-chr10:92630672..92631466,5	MCF-7	breast:
5	chr10:92549685..92552502-chr10:92554201..92556033,3	K562	blood:
6	chr10:91585659..91588157-chr10:92199771..92201481,2	MCF-7	breast:
7	chr10:92264610..92266324-chr17:57922453..57924071,2	MCF-7	breast:
8	chr10:92437999..92438515-chr10:92472507..92473297,2	MCF-7	breast:
9	chr10:92549685..92552502-chr10:92554201..92556033,3	K562	blood:
10	chr10:92255876..92258347-chr10:92261128..92263614,2	MCF-7	breast:
11	chr10:91553518..91554066-chr10:92352389..92353153,2	MCF-7	breast:
12	chr10:92543492..92547102-chr10:92549705..92553165,3	K562	blood:
13	chr10:92543492..92547102-chr10:92549705..92553165,3	K562	blood:
14	chr10:92481423..92483084-chr10:92487881..92490000,2	MCF-7	breast:
15	chr10:92184835..92186685-chr10:92187388..92189622,2	MCF-7	breast:
16	chr10:92387383..92387883-chrX:34116231..34116845,2	MCF-7	breast:
17	chr10:92501868..92504163-chr10:92504475..92507268,2	K562	blood:
18	chr10:92547332..92548353-chr10:92622125..92623330,4	MCF-7	breast:
19	chr10:92510904..92511887-chr10:92547546..92548208,2	MCF-7	breast:
20	chr10:92510777..92511813-chr10:92622355..92623374,9	MCF-7	breast:
21	chr10:92458548..92460592-chr10:92463016..92464897,2	K562	blood:
22	chr10:92501868..92504163-chr10:92504475..92507268,2	K562	blood:
23	chr10:92248193..92249705-chr10:92254263..92256644,2	MCF-7	breast:
24	chr10:92272442..92274509-chr10:92335877..92337780,2	MCF-7	breast:
25	chr10:92539122..92539997-chr10:92622412..92623352,3	K562	blood:
26	chr10:92513228..92514172-chr10:92622355..92622930,2	MCF-7	breast:
27	chr10:92064760..92066679-chr10:92166883..92168806,2	MCF-7	breast:
28	chr10:92051318..92054074-chr10:92099394..92101764,2	MCF-7	breast:
29	chr10:92254197..92256394-chr10:92257440..92260010,2	MCF-7	breast:
30	chr10:92047473..92050346-chr10:92165247..92168101,3	MCF-7	breast:
31	chr10:92197334..92197860-chr10:92338992..92339734,2	MCF-7	breast:
32	chr10:92196966..92197656-chr10:92339492..92340259,2	MCF-7	breast:
33	chr10:92458548..92460592-chr10:92463016..92464897,2	K562	blood:
34	chr10:92046589..92049031-chr10:92410934..92413664,2	MCF-7	breast:
35	chr10:91908033..91909093-chr10:92411955..92412824,3	MCF-7	breast:
36	chr10:92547996..92549557-chr10:92549602..92552195,2	K562	blood:
37	chr10:92048060..92049321-chr10:92352261..92353257,6	MCF-7	breast:
38	chr10:92511236..92511850-chr10:92630669..92631482,2	K562	blood:
39	chr10:92177056..92178628-chr10:92179037..92181377,2	MCF-7	breast:
40	chr10:92272442..92274509-chr10:92335877..92337780,2	MCF-7	breast:
41	chr10:92248193..92249705-chr10:92254263..92256644,2	MCF-7	breast:
42	chr10:92047878..92048766-chr10:92339403..92340022,2	MCF-7	breast:
43	chr10:92510876..92511819-chr10:92622380..92623098,6	K562	blood:
44	chr10:92510904..92511887-chr10:92547546..92548208,2	MCF-7	breast:
45	chr10:92047856..92048792-chr10:92412267..92413265,3	MCF-7	breast:
46	chr10:91553209..91554089-chr10:92418302..92419167,2	MCF-7	breast:
47	chr10:92254197..92256394-chr10:92257440..92260010,2	MCF-7	breast:
48	chr10:91908029..91908801-chr10:92352406..92353300,3	MCF-7	breast:
49	chr10:92547996..92549557-chr10:92549602..92552195,2	K562	blood:
50	chr10:92510841..92511818-chr10:92622320..92623307,5	MCF-7	breast:

(count:52 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPP30-10	chr10:92249010-92249108	NONHSAT015590
2	lnc-RPP30-6	chr10:92259030-92259128	XLOC_008556
3	lnc-RPP30-6	chr10:92245776-92245829	XLOC_008556
4	lnc-RPP30-9	chr10:92212454-92213123	NONHSAT015591
5	lnc-RPP30-10	chr10:92204435-92204560	NONHSAT015590
6	lnc-HTR7-1	chr10:92166207-92166352	XLOC_008901
7	lnc-HTR7-2	chr10:92290469-92290542	NONHSAT015585
8	lnc-HTR7-2	chr10:92156187-92156332	NONHSAT015585
9	lnc-RPP30-10	chr10:92280349-92280853	NONHSAT015590
10	lnc-HTR7-2	chr10:92153725-92153791	NONHSAT015585
11	lnc-RPP30-10	chr10:92203907-92204052	NONHSAT015587
12	lnc-RPP30-6	chr10:92213926-92214072	XLOC_008556
13	lnc-HTR7-1	chr10:92162711-92162796	XLOC_008901
14	lnc-RPP30-6	chr10:92262543-92262725	XLOC_008556
15	lnc-RPP30-5	chr10:92222474-92223143	XLOC_008557
16	lnc-RPP30-10	chr10:92235756-92235809	NONHSAT015587
17	lnc-RPP30-6	chr10:92259030-92259128	XLOC_008556
18	lnc-RPP30-6	chr10:92245776-92245829	ENSG00000224750
19	lnc-RPP30-5	chr10:92227622-92227709	XLOC_008557
20	lnc-HTR7-1	chr10:92211437-92211590	XLOC_008901
21	lnc-RPP30-10	chr10:92235756-92235809	ucscGeneNc_uc001kgy_2
22	lnc-HTR7-2	chr10:92277011-92277176	NONHSAT015585
23	lnc-RPP30-6	chr10:92245776-92245829	XLOC_008556
24	lnc-HTR7-2	chr10:92201417-92201570	NONHSAT015585
25	lnc-RPP30-6	chr10:92259030-92261192	XLOC_008556
26	lnc-HTR7-2	chr10:92152691-92152776	NONHSAT015585
27	lnc-RPP30-6	chr10:92213927-92214072	ENSG00000224750
28	lnc-RPP30-9	chr10:92217602-92217689	NONHSAT015591
29	lnc-RPP30-10	chr10:92204435-92204560	NONHSAT015589
30	lnc-HTR7-2	chr10:92152258-92152545	NONHSAT015585
31	lnc-RPP30-6	chr10:92245776-92245829	XLOC_008556
32	lnc-RPP30-10	chr10:92203906-92204052	ucscGeneNc_uc001kgy_2
33	lnc-RPP30-5	chr10:92225673-92225745	XLOC_008557
34	lnc-RPP30-10	chr10:92204417-92204560	NONHSAT015588
35	lnc-RPP30-10	chr10:92235756-92235809	NONHSAT015590
36	lnc-HTR7-1	chr10:92163745-92163811	XLOC_008901
37	lnc-RPP30-10	chr10:92249010-92251172	ucscGeneNc_uc001kgy_2
38	lnc-HTR7-1	chr10:92287031-92287196	XLOC_008901
39	lnc-RPP30-6	chr10:92214455-92214580	XLOC_008556
40	lnc-RPP30-9	chr10:92215653-92215725	NONHSAT015591
41	lnc-HTR7-1	chr10:92300489-92300562	XLOC_008901
42	lnc-RPP30-10	chr10:92249010-92249108	NONHSAT015589
43	lnc-RPP30-10	chr10:92235756-92235809	NONHSAT015589
44	lnc-HTR7-1	chr10:92162278-92162565	XLOC_008901
45	lnc-RPP30-6	chr10:92220529-92221258	XLOC_008556
46	lnc-RPP30-6	chr10:92290369-92290873	XLOC_008556
47	lnc-RPP30-6	chr10:92214437-92214580	XLOC_008556
48	lnc-RPP30-10	chr10:92210509-92211238	NONHSAT015588
49	lnc-RPP30-10	chr10:92249010-92251177	NONHSAT015587
50	lnc-RPP30-10	chr10:92252523-92252705	NONHSAT015589

No data

Variant related genes	Relation type
ENSG00000236373	TF binding region
ENSG00000238291	TF binding region
ENSG00000224750	TF binding region
ENSG00000236373	CpG island
ENSG00000238291	CpG island
ENSG00000224750	CpG island
ENSG00000148688	chromatin interactions
MLL2	miRNA target sites
BCL11B	miRNA target sites
MLL3	miRNA target sites

Extended variants
information (count: 14440 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:14440 , 50 per page) page: 1 2 3 4 5 6 7 ... 289

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7905472	chr10:92090785-92090786	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs17093619	chr10:92090815-92090816	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs551233602	chr10:92090825-92090826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs111977615	chr10:92090885-92090886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs192126113	chr10:92090893-92090894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs17093621	chr10:92090903-92090904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs372328672	chr10:92090921-92090922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs146094584	chr10:92090971-92090972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs12412310	chr10:92091009-92091010	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs113379089	chr10:92091033-92091034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs183871386	chr10:92091063-92091064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs7905786	chr10:92091099-92091100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs188410275	chr10:92091104-92091105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs553379578	chr10:92091164-92091165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs536977514	chr10:92091175-92091176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs565307235	chr10:92091181-92091182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs368868023	chr10:92091193-92091194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs113823959	chr10:92091208-92091209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs60973226	chr10:92091221-92091222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs367635249	chr10:92091241-92091242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs111505561	chr10:92091285-92091286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs577212275	chr10:92091324-92091325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs12778658	chr10:92091325-92091326	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs553092769	chr10:92091347-92091348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs371377567	chr10:92091349-92091350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs572887679	chr10:92091355-92091356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs541850911	chr10:92091359-92091360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs11813517	chr10:92091367-92091368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs559318299	chr10:92091368-92091369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs545272249	chr10:92091371-92091372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs10881783	chr10:92091374-92091375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575910132	chr10:92091395-92091396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs544439146	chr10:92091414-92091415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs371735126	chr10:92091420-92091421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs376751763	chr10:92091456-92091457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs113226594	chr10:92091464-92091465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs545903445	chr10:92091479-92091480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs559522128	chr10:92091500-92091501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs528068499	chr10:92091505-92091506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs548187884	chr10:92091516-92091517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs376902998	chr10:92091540-92091541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs79924216	chr10:92091546-92091547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs112056336	chr10:92091575-92091576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs577570772	chr10:92091601-92091602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs11186127	chr10:92091616-92091617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs6583700	chr10:92091620-92091621	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs143695285	chr10:92091628-92091629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs6583701	chr10:92091649-92091650	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs553029159	chr10:92091683-92091684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs545495434	chr10:92091742-92091743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1360 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92086800-92092200	Weak transcription	Aorta	Aorta
2	chr10:92089200-92092000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:92092000-92092200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:92092200-92092400	ZNF genes & repeats	Aorta	Aorta
5	chr10:92092200-92092400	Enhancers	Esophagus	oesophagus
6	chr10:92092400-92101400	Weak transcription	Aorta	Aorta
7	chr10:92093000-92094400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:92097000-92097400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:92101400-92101600	Enhancers	Aorta	Aorta
10	chr10:92103000-92103200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:92103000-92103600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:92103000-92104600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:92103200-92104000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:92103400-92103800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:92103800-92104600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:92104000-92104200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr10:92104000-92104400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr10:92104000-92104400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr10:92104200-92105000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:92104600-92107400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:92105000-92105200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr10:92105200-92107600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:92106600-92107200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr10:92106600-92107800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr10:92106800-92107200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr10:92106800-92108400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:92107000-92107600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:92107000-92107600	Enhancers	Osteobl	bone
29	chr10:92107000-92108200	Enhancers	HMEC	breast
30	chr10:92107400-92108000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr10:92107400-92108200	Enhancers	NHEK	skin
32	chr10:92107800-92108000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr10:92107800-92108000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
34	chr10:92107800-92108200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:92112200-92112400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:92112200-92112600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:92112600-92114200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:92112600-92114800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:92114800-92115400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr10:92115400-92143200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:92117800-92119000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:92118000-92119200	Enhancers	NHEK	skin
43	chr10:92118200-92119000	Enhancers	HMEC	breast
44	chr10:92118600-92119200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr10:92121800-92122000	Enhancers	HUVEC	blood vessel
46	chr10:92122400-92123600	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr10:92122400-92123800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:92122800-92123400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr10:92122800-92123400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr10:92122800-92125000	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links