Variant report

Variant	nsv551963
Chromosome Location	chr10:96720262-96743943
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96723396..96724119-chr10:96892337..96892982,2	MCF-7	breast:

Extended variants
information (count: 1090 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:1090 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12262254	chr10:96720262-96720263	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs559656532	chr10:96720274-96720275	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs554021229	chr10:96720279-96720280	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs572853665	chr10:96720296-96720297	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs541526986	chr10:96720316-96720317	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs561116833	chr10:96720324-96720325	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs574727347	chr10:96720356-96720357	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs543687224	chr10:96720361-96720362	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs34911663	chr10:96720381-96720382	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs34977198	chr10:96720405-96720406	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs563686880	chr10:96720413-96720414	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs532392561	chr10:96720446-96720447	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs1200315	chr10:96720463-96720464	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs576695426	chr10:96720468-96720469	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs528559492	chr10:96720508-96720509	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs7897401	chr10:96720511-96720512	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs7897079	chr10:96720518-96720519	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs113321280	chr10:96720527-96720528	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs80190140	chr10:96720537-96720538	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs550888567	chr10:96720544-96720545	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs375140467	chr10:96720549-96720550	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs147481154	chr10:96720561-96720562	Genic enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs539361814	chr10:96720606-96720607	Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs552885690	chr10:96720612-96720613	Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs55804705	chr10:96720614-96720615	Genic enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs535142601	chr10:96720648-96720649	Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs555071894	chr10:96720676-96720677	Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs574690803	chr10:96720696-96720697	Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs139933607	chr10:96720784-96720785	Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs544684967	chr10:96720813-96720814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs376387972	chr10:96720829-96720830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs145454177	chr10:96720863-96720864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs561252979	chr10:96720920-96720921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs374857945	chr10:96720923-96720924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs147607794	chr10:96720926-96720927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs546203754	chr10:96720942-96720943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs184110111	chr10:96720944-96720945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs375492845	chr10:96720947-96720948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs75763245	chr10:96720948-96720949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs34231123	chr10:96720981-96720982	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs111313276	chr10:96720986-96720987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs117406673	chr10:96721008-96721009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs550754242	chr10:96721055-96721056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs188589577	chr10:96721090-96721091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs7073165	chr10:96721107-96721108	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs1200314	chr10:96721143-96721144	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs117385518	chr10:96721167-96721168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs535126279	chr10:96721171-96721172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs61886796	chr10:96721181-96721182	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs61886797	chr10:96721190-96721191	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Schizophrenia	23813976	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96718600-96737600	Weak transcription	Fetal Intestine Large	intestine
2	chr10:96719600-96720600	ZNF genes & repeats	Fetal Intestine Small	intestine
3	chr10:96720200-96720800	Genic enhancers	Liver	Liver
4	chr10:96720600-96723800	Weak transcription	Fetal Intestine Small	intestine
5	chr10:96720800-96722200	Weak transcription	Liver	Liver
6	chr10:96722200-96722600	Enhancers	Liver	Liver
7	chr10:96722600-96724800	Weak transcription	Liver	Liver
8	chr10:96723200-96723800	Enhancers	Stomach Mucosa	stomach
9	chr10:96723400-96723600	Enhancers	Gastric	stomach
10	chr10:96723400-96724200	Enhancers	A549	lung
11	chr10:96723800-96724000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:96723800-96724000	Enhancers	Fetal Intestine Small	intestine
13	chr10:96724800-96725400	Genic enhancers	Liver	Liver
14	chr10:96725400-96730600	Weak transcription	Liver	Liver
15	chr10:96730600-96738600	Strong transcription	Liver	Liver
16	chr10:96734600-96734800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:96737600-96738200	ZNF genes & repeats	Fetal Intestine Large	intestine
18	chr10:96738000-96749800	Weak transcription	Fetal Intestine Small	intestine
19	chr10:96738200-96746000	Weak transcription	Fetal Intestine Large	intestine
20	chr10:96738600-96740000	Weak transcription	Liver	Liver
21	chr10:96738800-96748600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr10:96740000-96746400	Strong transcription	Liver	Liver
23	chr10:96743400-96743800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr10:96743400-96743800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr10:96743600-96743800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr10:96743600-96744200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:96743800-96751600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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