Variant report

Variant	nsv551982
Chromosome Location	chr10:96870565-96873936
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:103 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10882539	chr10:96870565-96870566	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs546999366	chr10:96870591-96870592	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs548583490	chr10:96870620-96870621	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs568453930	chr10:96870625-96870626	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs537019721	chr10:96870676-96870677	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs186114133	chr10:96870686-96870687	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs111433382	chr10:96870713-96870714	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs565768338	chr10:96870714-96870715	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs150989972	chr10:96870755-96870756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs77402853	chr10:96870759-96870760	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs539535301	chr10:96870760-96870761	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs181468809	chr10:96870801-96870802	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs552795449	chr10:96870806-96870807	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs186503404	chr10:96870822-96870823	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs536263782	chr10:96870827-96870828	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs555345666	chr10:96870851-96870852	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs191344440	chr10:96870879-96870880	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs1854029	chr10:96870913-96870914	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs183059499	chr10:96870946-96870947	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs185834972	chr10:96871033-96871034	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs190933025	chr10:96871043-96871044	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs548533340	chr10:96871055-96871056	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs568125023	chr10:96871060-96871061	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs371953536	chr10:96871152-96871153	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs146223275	chr10:96871200-96871201	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs183074435	chr10:96871244-96871245	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs548883284	chr10:96871300-96871301	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs562196237	chr10:96871305-96871306	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs187957098	chr10:96871307-96871308	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs550600024	chr10:96871353-96871354	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs570508863	chr10:96871392-96871393	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs192190035	chr10:96871396-96871397	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs546656061	chr10:96871439-96871440	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs566681864	chr10:96871455-96871456	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs61310181	chr10:96871469-96871470	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs10882540	chr10:96871506-96871507	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs575493586	chr10:96871540-96871541	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs538136969	chr10:96871696-96871697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs557816473	chr10:96871699-96871700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs370139058	chr10:96871706-96871707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs547357306	chr10:96871773-96871774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs56979418	chr10:96871781-96871782	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs560259788	chr10:96871845-96871846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs75342347	chr10:96871851-96871852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs542016122	chr10:96871875-96871876	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs182770390	chr10:96871888-96871889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs562297198	chr10:96871944-96871945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs147768533	chr10:96871975-96871976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs550840861	chr10:96872002-96872003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs564155742	chr10:96872004-96872005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96869000-96871600	Enhancers	HepG2	liver
2	chr10:96871600-96876200	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links