Variant report

Variant	nsv552007
Chromosome Location	chr10:96872026-96873178
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546692989	chr10:96872032-96872033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs188087782	chr10:96872125-96872126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs7072133	chr10:96872142-96872143	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs548955751	chr10:96872238-96872239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs569015144	chr10:96872316-96872317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs545357913	chr10:96872424-96872425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs538174372	chr10:96872448-96872449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs191768296	chr10:96872461-96872462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs201323519	chr10:96872584-96872585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs556471353	chr10:96872605-96872606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs554123873	chr10:96872607-96872608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs6583979	chr10:96872611-96872612	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs533720209	chr10:96872663-96872664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs75323726	chr10:96872691-96872692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs561000387	chr10:96872722-96872723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs116966825	chr10:96872728-96872729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs184684244	chr10:96872785-96872786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562171576	chr10:96872794-96872795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs78169338	chr10:96872834-96872835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs188903737	chr10:96872842-96872843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs192519099	chr10:96872891-96872892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs540412690	chr10:96872895-96872896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs564394129	chr10:96872902-96872903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs554250130	chr10:96872936-96872937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs576797862	chr10:96872940-96872941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs545809112	chr10:96872950-96872951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs117389797	chr10:96872963-96872964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs185434120	chr10:96873021-96873022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs560538117	chr10:96873114-96873115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs112309553	chr10:96873169-96873170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96871600-96876200	Weak transcription	HepG2	liver

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