Variant report

Variant	nsv552024
Chromosome Location	chr10:99126249-99173870
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1449)
CpG islands
(count:977)
Chromatin interactive
region (count:77)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1449 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:99160881-99161283	HepG2	liver:	n/a	n/a
2	ARID3A	chr10:99171130-99171535	HepG2	liver:	n/a	n/a
3	ARID3A	chr10:99166997-99167779	HepG2	liver:	n/a	n/a
4	ARID3A	chr10:99159769-99160330	K562	blood:	n/a	n/a
5	ARID3A	chr10:99159776-99160194	HepG2	liver:	n/a	n/a
6	ARID3A	chr10:99167097-99167598	K562	blood:	n/a	n/a
7	ATF1	chr10:99159804-99160353	K562	blood:	n/a	n/a
8	ATF1	chr10:99166938-99167538	K562	blood:	n/a	n/a
9	ATF1	chr10:99160920-99161268	K562	blood:	n/a	n/a
10	ATF2	chr10:99166910-99167820	H1-hESC	embryonic stem cell:	n/a	n/a
11	ATF2	chr10:99160849-99161234	GM12878	blood:	n/a	n/a
12	ATF2	chr10:99160754-99161267	H1-hESC	embryonic stem cell:	n/a	n/a
13	ATF2	chr10:99160824-99161324	GM12878	blood:	n/a	n/a
14	ATF2	chr10:99166967-99167704	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF3	chr10:99167195-99167427	K562	blood:	n/a	n/a
16	ATF3	chr10:99166987-99167654	A549	lung:	n/a	n/a
17	ATF3	chr10:99159885-99160073	K562	blood:	n/a	chr10:99159942-99159956
18	ATF3	chr10:99159737-99160314	K562	blood:	n/a	chr10:99159942-99159956
19	BCL3	chr10:99160662-99161319	A549	lung:	n/a	n/a
20	BCL3	chr10:99135562-99135940	GM12878	blood:	n/a	n/a
21	BCL3	chr10:99166936-99167723	A549	lung:	n/a	n/a
22	BCLAF1	chr10:99166976-99167593	GM12878	blood:	n/a	n/a
23	BCLAF1	chr10:99160733-99161314	GM12878	blood:	n/a	n/a
24	BHLHE40	chr10:99167060-99167477	GM12878	blood:	n/a	n/a
25	BHLHE40	chr10:99171252-99171587	HepG2	liver:	n/a	n/a
26	BHLHE40	chr10:99167134-99167553	HepG2	liver:	n/a	n/a
27	BHLHE40	chr10:99167064-99167534	K562	blood:	n/a	n/a
28	BHLHE40	chr10:99172837-99173078	GM12878	blood:	n/a	n/a
29	BHLHE40	chr10:99160897-99161112	K562	blood:	n/a	n/a
30	BRCA1	chr10:99160885-99161265	Hela-S3	cervix:	n/a	n/a
31	BRCA1	chr10:99160908-99161194	HepG2	liver:	n/a	n/a
32	BRCA1	chr10:99166992-99167486	Hela-S3	cervix:	n/a	n/a
33	BRCA1	chr10:99167392-99167416	GM12878	blood:	n/a	n/a
34	CBX3	chr10:99160822-99161454	K562	blood:	n/a	n/a
35	CBX3	chr10:99166957-99167809	K562	blood:	n/a	n/a
36	CCNT2	chr10:99160710-99161245	K562	blood:	n/a	chr10:99160812-99160821
37	CCNT2	chr10:99167139-99167366	K562	blood:	n/a	n/a
38	CCNT2	chr10:99159842-99160299	K562	blood:	n/a	n/a
39	CEBPB	chr10:99172608-99172909	HepG2	liver:	n/a	n/a
40	CEBPB	chr10:99167014-99167316	K562	blood:	n/a	chr10:99167158-99167169
41	CEBPB	chr10:99151881-99152150	IMR90	lung:	n/a	chr10:99152042-99152053
42	CEBPB	chr10:99168256-99168627	MCF-7	breast:	n/a	n/a
43	CEBPB	chr10:99151938-99152071	A549	lung:	n/a	chr10:99152042-99152053
44	CEBPB	chr10:99134356-99134671	K562	blood:	n/a	chr10:99134487-99134498
45	CEBPB	chr10:99151997-99152091	Hela-S3	cervix:	n/a	chr10:99152042-99152053
46	CEBPB	chr10:99134327-99134668	IMR90	lung:	n/a	chr10:99134487-99134498
47	CEBPB	chr10:99162841-99162998	HepG2	liver:	n/a	n/a
48	CEBPB	chr10:99167022-99167353	IMR90	lung:	n/a	chr10:99167158-99167169
49	CEBPB	chr10:99151883-99152083	HepG2	liver:	n/a	chr10:99152042-99152053
50	CEBPB	chr10:99159626-99160397	K562	blood:	n/a	chr10:99159837-99159849

(count:977 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:99157384-99157434	HCT-116	colon:	n/a
2	chr10:99157384-99157434	HCT-116	colon:	n/a
3	chr10:99160939-99160989	HepG2	liver:	n/a
4	chr10:99160096-99160146	HUVEC	blood vessel:	n/a
5	chr10:99161172-99161222	HIPEpiC	eye:	n/a
6	chr10:99161311-99161361	HCT-116	colon:	n/a
7	chr10:99161062-99161112	NHDF-neo	bronchial:	n/a
8	chr10:99161062-99161112	Hela-S3	cervix:	n/a
9	chr10:99157384-99157434	U87	brain:	n/a
10	chr10:99161279-99161329	CMK	blood:	n/a
11	chr10:99161148-99161198	GM19239	blood:	n/a
12	chr10:99160904-99160954	HAEpiC	amniotic membrane:	n/a
13	chr10:99160200-99160250	BE2_C	brain:	n/a
14	chr10:99160939-99160989	SAEC	small airway:	n/a
15	chr10:99161311-99161361	GM12891	blood:	n/a
16	chr10:99160904-99160954	ECC-1	luminal epithelium:	n/a
17	chr10:99161148-99161198	HAEpiC	amniotic membrane:	n/a
18	chr10:99164260-99164310	H1-hESC	embryonic stem cell:	embryo
19	chr10:99160200-99160250	GM06990	blood:	n/a
20	chr10:99157384-99157434	AG09319	gingival:	n/a
21	chr10:99161062-99161112	LNCaP	prostate:	n/a
22	chr10:99161199-99161249	GM12891	blood:	n/a
23	chr10:99164260-99164310	PANC-1	pancreas:	n/a
24	chr10:99161172-99161222	Hepatocyte	liver:	n/a
25	chr10:99161199-99161249	HCF	heart:	n/a
26	chr10:99161172-99161222	HepG2	liver:	n/a
27	chr10:99161062-99161112	GM12891	blood:	n/a
28	chr10:99160200-99160250	NT2-D1	testis:	n/a
29	chr10:99160904-99160954	ovcar-3	ovarian:	n/a
30	chr10:99161148-99161198	K562	blood:	n/a
31	chr10:99160200-99160250	AoSMC	blood vessel:	n/a
32	chr10:99161199-99161249	NHDF-neo	bronchial:	n/a
33	chr10:99161279-99161329	HMEC	breast:	n/a
34	chr10:99161311-99161361	BJ	skin:	n/a
35	chr10:99160663-99160713	H1-hESC	embryonic stem cell:	embryo
36	chr10:99160096-99160146	HRPEpiC	eye:	n/a
37	chr10:99160904-99160954	SK-N-MC	brain:	n/a
38	chr10:99160939-99160989	BJ	skin:	n/a
39	chr10:99161062-99161112	HPAEpiC	pulmonary alveolar:	n/a
40	chr10:99164260-99164310	ovcar-3	ovarian:	n/a
41	chr10:99160939-99160989	NH-A	brain:	n/a
42	chr10:99161516-99161566	HRPEpiC	eye:	n/a
43	chr10:99164260-99164310	AG04449	skin:	fetal
44	chr10:99161279-99161329	HL-60	blood:	n/a
45	chr10:99161279-99161329	PFSK-1	brain:	n/a
46	chr10:99161148-99161198	A549	lung:	n/a
47	chr10:99161062-99161112	SK-N-MC	brain:	n/a
48	chr10:99161279-99161329	IMR90	lung:	fetal
49	chr10:99161311-99161361	Caco-2	colon:	n/a
50	chr10:99160096-99160146	HCPEpiC	choroid plexus:	n/a

(count:77 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr10:99158229..99164055-chr10:99184399..99190088,9	MCF-7	breast:
2	chr10:99158602..99162553-chr10:99184335..99188453,6	MCF-7	breast:
3	chr10:99167329..99170303-chr10:99178953..99180930,2	K562	blood:
4	chr10:99143626..99146860-chr10:99148895..99151497,3	K562	blood:
5	chr10:99134756..99136338-chr10:99159050..99161820,2	K562	blood:
6	chr10:99165865..99167587-chr10:99186226..99189247,3	MCF-7	breast:
7	chr10:99159690..99162699-chr10:99184060..99186818,5	K562	blood:
8	chr10:99168420..99171279-chr10:99172405..99174703,2	K562	blood:
9	chr10:99168420..99171279-chr10:99172405..99174703,2	K562	blood:
10	chr10:99173227..99177887-chr10:99178891..99183269,7	K562	blood:
11	chr10:99167048..99167690-chr10:99202933..99203496,3	MCF-7	breast:
12	chr10:99159230..99162370-chr10:99166178..99169290,4	K562	blood:
13	chr10:99160449..99162283-chr10:99168033..99169883,3	MCF-7	breast:
14	chr10:99136794..99139401-chr10:99158597..99161581,2	K562	blood:
15	chr10:99166045..99168504-chr10:99170322..99173005,2	K562	blood:
16	chr1:234509008..234509787-chr10:99160551..99161137,2	Hela-S3	cervix:
17	chr10:99167036..99170302-chr10:99173339..99176571,3	MCF-7	breast:
18	chr10:99172592..99175425-chr20:52209106..52210731,2	MCF-7	breast:
19	chr10:99166045..99168504-chr10:99170322..99173005,2	K562	blood:
20	chr10:99167020..99167837-chr10:99221428..99222089,2	K562	blood:
21	chr10:99159241..99162153-chr10:99168061..99170651,2	MCF-7	breast:
22	chr10:99158578..99161453-chr10:99205742..99208123,2	MCF-7	breast:
23	chr10:99158767..99161294-chr10:99204142..99206207,3	K562	blood:
24	chr10:99171445..99174170-chr10:99204178..99207806,5	MCF-7	breast:
25	chr10:99149313..99151551-chr10:99158288..99160228,2	MCF-7	breast:
26	chr10:99168511..99173804-chr10:99184850..99187816,7	MCF-7	breast:
27	chr10:99123357..99125216-chr10:99127019..99128808,2	K562	blood:
28	chr10:99172474..99176419-chr10:99183924..99185972,3	K562	blood:
29	chr10:99171315..99175453-chr10:99176654..99180468,6	K562	blood:
30	chr10:99163386..99166099-chr10:99171495..99174383,2	MCF-7	breast:
31	chr10:99170419..99173744-chr10:99178891..99183198,3	MCF-7	breast:
32	chr10:99166916..99167827-chr10:99185028..99186031,4	K562	blood:
33	chr10:99166657..99167578-chr10:99223483..99224439,2	MCF-7	breast:
34	chr10:99159358..99162440-chr10:99256931..99260180,3	MCF-7	breast:
35	chr10:99166882..99167838-chr10:99223370..99224268,2	MCF-7	breast:
36	chr10:99160158..99162662-chr10:99167761..99169476,2	K562	blood:
37	chr10:99160516..99161073-chr19:50083420..50084338,2	Hela-S3	cervix:
38	chr10:99160204..99163024-chr10:99171580..99174293,2	K562	blood:
39	chr10:99122048..99124572-chr10:99134855..99137731,2	MCF-7	breast:
40	chr10:99145838..99147761-chr10:99158745..99160617,2	K562	blood:
41	chr10:99165782..99177128-chr10:99179856..99189832,30	MCF-7	breast:
42	chr10:99167024..99167842-chr10:99193469..99194416,4	MCF-7	breast:
43	chr10:99166868..99167797-chr10:99193919..99194862,2	K562	blood:
44	chr10:99160077..99160674-chr12:49412274..49412839,2	NB4	blood:
45	chr10:99159614..99162570-chr10:99184923..99189339,4	K562	blood:
46	chr10:99166902..99167876-chr10:99185470..99186302,2	MCF-7	breast:
47	chr10:99160174..99161140-chr14:23564728..23565338,2	Hela-S3	cervix:
48	chr10:99144720..99146579-chr10:99146888..99149275,2	MCF-7	breast:
49	chr10:99166892..99169975-chr10:99170359..99172836,3	MCF-7	breast:
50	chr10:99124139..99126270-chr21:41756130..41757689,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PGAM1-1	chr10:99173633-99173713	XLOC_008574
2	lnc-PGAM1-3	chr10:99163546-99163703	l_355_chr10:99163545-99169317_testes
3	lnc-AL355490.1-4	chr10:99152954-99153304	NONHSAT015860
4	lnc-AL355490.1-2	chr10:99168531-99169242	ucscGeneNc_uc001kng_1
5	lnc-PGAM1-3	chr10:99169049-99169317	l_355_chr10:99163545-99169317_testes

No data

Variant related genes	Relation type
RRP12	TF binding region
ENSG00000231970	TF binding region
ENSG00000231508	TF binding region
RRP12	CpG island
ENSG00000231970	CpG island
ENSG00000231508	CpG island
ENSG00000171311	chromatin interactions
ENSG00000165886	chromatin interactions
ENSG00000171314	chromatin interactions
ENSG00000100813	chromatin interactions
ENSG00000168275	chromatin interactions
ENSG00000181274	chromatin interactions
ENSG00000052749	chromatin interactions
ENSG00000225850	chromatin interactions
ENSG00000224474	chromatin interactions
ENSG00000126460	chromatin interactions
ENSG00000200737	chromatin interactions
ENSG00000231970	chromatin interactions
ENSG00000155229	chromatin interactions
ENSG00000181929	chromatin interactions
ENSG00000171940	chromatin interactions
ENSG00000142546	chromatin interactions
ENSG00000179933	chromatin interactions
ENSG00000231663	chromatin interactions
ENSG00000165879	chromatin interactions
ENSG00000171307	chromatin interactions

Extended variants
information (count: 2172 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:2172 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2275581	chr10:99126249-99126250	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs138766679	chr10:99126257-99126258	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs150090174	chr10:99126285-99126286	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs138362675	chr10:99126301-99126302	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs578010790	chr10:99126302-99126303	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs200010385	chr10:99126330-99126331	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs370528878	chr10:99126348-99126349	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs375203647	chr10:99126391-99126392	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs543352035	chr10:99126421-99126422	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs368351541	chr10:99126422-99126423	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs72838759	chr10:99126426-99126427	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs542643396	chr10:99126450-99126451	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs200271269	chr10:99126453-99126454	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs371187603	chr10:99126465-99126466	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs374741225	chr10:99126470-99126471	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs201046937	chr10:99126475-99126476	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs181545438	chr10:99126480-99126481	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs11189169	chr10:99126493-99126494	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs45527941	chr10:99126513-99126514	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs147440292	chr10:99126518-99126519	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs139760006	chr10:99126519-99126520	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs28362479	chr10:99126521-99126522	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs143678125	chr10:99126539-99126540	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs370579676	chr10:99126540-99126541	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs143991248	chr10:99126546-99126547	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs148537105	chr10:99126557-99126558	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs544769802	chr10:99126568-99126569	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs183155457	chr10:99126593-99126594	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs11551275	chr10:99126597-99126598	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs370734336	chr10:99126613-99126614	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs530502712	chr10:99126618-99126619	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs549013372	chr10:99126643-99126644	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs374666952	chr10:99126687-99126688	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs200878128	chr10:99126715-99126716	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs2297989	chr10:99126719-99126720	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs367647984	chr10:99126754-99126755	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs371707299	chr10:99126762-99126763	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs200218823	chr10:99126772-99126773	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs200982551	chr10:99126776-99126777	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs202087020	chr10:99126777-99126778	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs201279839	chr10:99126845-99126846	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs369716734	chr10:99126905-99126906	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs2297990	chr10:99126923-99126924	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs7896111	chr10:99126926-99126927	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs141819150	chr10:99126937-99126938	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs540579868	chr10:99127051-99127052	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs884450	chr10:99127069-99127070	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs577454538	chr10:99127116-99127117	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs28362478	chr10:99127164-99127165	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs145243220	chr10:99127186-99127187	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Autosomal dominant partial epilepsy	18472482	CNVD
Breast cancer	16397240	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Ependymoma	20639864	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1925 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99107000-99131800	Weak transcription	Fetal Kidney	kidney
2	chr10:99107200-99129200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:99109000-99157800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:99109600-99157800	Strong transcription	Fetal Stomach	stomach
5	chr10:99110600-99132800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:99110800-99139800	Weak transcription	Stomach Mucosa	stomach
7	chr10:99111600-99141800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:99113200-99135400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:99113400-99158600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:99113800-99138800	Strong transcription	Fetal Intestine Small	intestine
11	chr10:99113800-99158800	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:99113800-99159800	Weak transcription	Fetal Brain Male	brain
13	chr10:99114400-99135000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:99114600-99159000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:99115200-99127000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:99115200-99133800	Strong transcription	A549	lung
17	chr10:99115200-99134200	Strong transcription	Gastric	stomach
18	chr10:99115200-99136000	Strong transcription	Fetal Brain Female	brain
19	chr10:99115200-99136800	Strong transcription	Dnd41	blood
20	chr10:99115200-99145800	Strong transcription	H9 Cell Line	embryonic stem cell
21	chr10:99115200-99146800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:99115400-99134200	Strong transcription	Pancreas	Pancrea
23	chr10:99115400-99157600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:99115600-99127000	Strong transcription	Ovary	ovary
25	chr10:99115600-99127600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:99115600-99133800	Genic enhancers	Primary monocytes fromperipheralblood	blood
27	chr10:99115600-99134000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:99115600-99141600	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:99115600-99159800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr10:99115800-99157800	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:99115800-99157800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:99115800-99158600	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr10:99116000-99134000	Strong transcription	Brain Germinal Matrix	brain
34	chr10:99116000-99136800	Strong transcription	Primary T cells from cord blood	blood
35	chr10:99116400-99127200	Strong transcription	Left Ventricle	heart
36	chr10:99116800-99131000	Weak transcription	NHDF-Ad	bronchial
37	chr10:99116800-99135600	Strong transcription	Brain Anterior Caudate	brain
38	chr10:99117000-99128400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:99117000-99133800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:99117000-99134200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:99117200-99126600	Weak transcription	Hela-S3	cervix
42	chr10:99117200-99128400	Weak transcription	Fetal Thymus	thymus
43	chr10:99117200-99132800	Weak transcription	Small Intestine	intestine
44	chr10:99117400-99138800	Strong transcription	Fetal Intestine Large	intestine
45	chr10:99118000-99133800	Strong transcription	HSMMtube	muscle
46	chr10:99118000-99159800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:99118200-99127200	Strong transcription	NHLF	lung
48	chr10:99118200-99134200	Strong transcription	Right Ventricle	heart
49	chr10:99118600-99133800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:99118800-99126600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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