Variant report

Variant	nsv553895
Chromosome Location	chr11:25773322-25924809
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:16)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:25813617..25816295-chr11:25817467..25820329,2	K562	blood:
2	chr11:25845519..25848193-chr11:25860791..25863329,2	MCF-7	breast:
3	chr11:25813617..25816295-chr11:25817467..25820329,2	K562	blood:
4	chr11:25845519..25848193-chr11:25860791..25863329,2	MCF-7	breast:

(count:16 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANO3-3	chr11:25802028-25802169	ENSG00000254456
2	lnc-ANO3-3	chr11:25803176-25803213	ENSG00000254456
3	lnc-ANO3-3	chr11:25799241-25799338	ENSG00000254456
4	lnc-ANO3-3	chr11:25788759-25788835	NONHSAT018451
5	lnc-ANO3-3	chr11:25795717-25795970	ENSG00000254456
6	lnc-ANO3-3	chr11:25799241-25799338	NONHSAT018451
7	lnc-ANO3-3	chr11:25802028-25802169	NONHSAT018451
8	lnc-ANO3-3	chr11:25802028-25802169	ENSG00000254456
9	lnc-ANO3-3	chr11:25799241-25799338	ENSG00000254456
10	lnc-ANO3-3	chr11:25803176-25803305	ENSG00000254456
11	lnc-ANO3-3	chr11:25792018-25792115	ENSG00000254456
12	lnc-ANO3-3	chr11:25792018-25792115	NONHSAT018451
13	lnc-ANO3-3	chr11:25803176-25803213	NONHSAT018451
14	lnc-ANO3-3	chr11:25788759-25788835	ENSG00000254456
15	lnc-ANO3-3	chr11:25795717-25795970	NONHSAT018451
16	lnc-ANO3-3	chr11:25792018-25792115	ENSG00000254456

No data

Extended variants
information (count: 1703 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:1703 , 50 per page) page: 1 2 3 4 5 6 7 ... 35

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10501023	chr11:25773819-25773820	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs10501024	chr11:25773863-25773864	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs184186400	chr11:25773869-25773870	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs570510631	chr11:25773893-25773894	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs528302380	chr11:25773894-25773895	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs546546852	chr11:25773925-25773926	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs10767448	chr11:25773947-25773948	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs535451638	chr11:25773952-25773953	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs187054105	chr11:25773959-25773960	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs12789056	chr11:25773961-25773962	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs200117502	chr11:25773985-25773986	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs139709457	chr11:25773986-25773987	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs367730551	chr11:25773987-25773988	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs11822522	chr11:25774039-25774040	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs10742118	chr11:25774040-25774041	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs542067580	chr11:25774053-25774054	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs573329408	chr11:25774097-25774098	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs540851303	chr11:25774147-25774148	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs556080025	chr11:25774160-25774161	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs191969765	chr11:25774165-25774166	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs10767449	chr11:25774215-25774216	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs78652543	chr11:25774245-25774246	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs553993993	chr11:25774252-25774253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs530536448	chr11:25774282-25774283	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs146289580	chr11:25774294-25774295	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs61886463	chr11:25774314-25774315	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs570770087	chr11:25774379-25774380	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs183243366	chr11:25774391-25774392	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs187199881	chr11:25774394-25774395	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs141874336	chr11:25774406-25774407	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs1158052	chr11:25774434-25774435	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs191909783	chr11:25774516-25774517	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs150780949	chr11:25774576-25774577	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs139136255	chr11:25774648-25774649	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs539843476	chr11:25774659-25774660	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs551563038	chr11:25774661-25774662	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs145317508	chr11:25774731-25774732	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs534121630	chr11:25774739-25774740	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs140203927	chr11:25774744-25774745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs556042941	chr11:25774771-25774772	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs369583649	chr11:25774798-25774799	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs182667996	chr11:25774852-25774853	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs538499182	chr11:25774858-25774859	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs147643427	chr11:25774893-25774894	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs10767450	chr11:25774936-25774937	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs545808482	chr11:25775018-25775019	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs140562203	chr11:25775021-25775022	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs572943318	chr11:25775040-25775041	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs539946444	chr11:25775089-25775090	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs115788400	chr11:25775154-25775155	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25773800-25774800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:25774800-25775200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:25777400-25778000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:25777400-25778200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:25777600-25778000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:25778000-25779600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:25779600-25780600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:25779600-25780800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:25788600-25789200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:25789000-25789200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:25789200-25790200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:25790200-25791000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:25790400-25791400	Enhancers	Hela-S3	cervix
14	chr11:25790600-25791200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:25790600-25791200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:25790600-25791400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:25791000-25791800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr11:25791200-25791800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:25798800-25799200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:25802000-25803800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:25802400-25802600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:25815800-25816800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:25818400-25818800	Enhancers	Adipose Nuclei	Adipose
24	chr11:25827200-25827800	Enhancers	Fetal Heart	heart
25	chr11:25860600-25861000	Enhancers	Hela-S3	cervix
26	chr11:25866000-25866800	Enhancers	Brain Germinal Matrix	brain
27	chr11:25866400-25867000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:25870400-25871000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
29	chr11:25877800-25878800	Enhancers	HUVEC	blood vessel
30	chr11:25878800-25882400	Weak transcription	HUVEC	blood vessel
31	chr11:25879600-25879800	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr11:25880000-25881200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:25880400-25883000	Enhancers	Duodenum Mucosa	Duodenum
34	chr11:25881200-25882600	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr11:25881200-25882800	Enhancers	Fetal Intestine Small	intestine
36	chr11:25881200-25883200	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr11:25881400-25883400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:25882200-25883200	Enhancers	Fetal Brain Male	brain
39	chr11:25882200-25883200	Enhancers	Fetal Brain Female	brain
40	chr11:25882200-25883400	Enhancers	Fetal Lung	lung
41	chr11:25882200-25883800	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr11:25882200-25883800	Enhancers	Fetal Heart	heart
43	chr11:25882400-25882800	Enhancers	Fetal Kidney	kidney
44	chr11:25882400-25883000	Enhancers	Colon Smooth Muscle	Colon
45	chr11:25882400-25883000	Enhancers	Rectal Smooth Muscle	rectum
46	chr11:25882400-25883000	Enhancers	HUVEC	blood vessel
47	chr11:25882400-25883200	Enhancers	Brain Germinal Matrix	brain
48	chr11:25882400-25883200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr11:25882400-25883800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:25882400-25884200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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