Variant report

Variant	nsv554411
Chromosome Location	chr11:50415993-50766308
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:50670378..50671219-chr4:101762576..101763076,2	MCF-7	breast:
2	chr11:50731452..50731974-chr8:46856234..46856754,2	MCF-7	breast:

Extended variants
information (count: 24866 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:24866 , 50 per page) page: 1 2 3 4 5 6 7 ... 498

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537952533	chr11:50415997-50415998	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs554372215	chr11:50416011-50416012	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs558466761	chr11:50416026-50416027	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs149127933	chr11:50416050-50416051	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs61894067	chr11:50416059-50416060	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs2872366	chr11:50416066-50416067	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs563857553	chr11:50416084-50416085	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs545793734	chr11:50416089-50416090	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs529474148	chr11:50416091-50416092	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs78071180	chr11:50416105-50416106	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs370906398	chr11:50416136-50416137	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs571700472	chr11:50416158-50416159	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs148263646	chr11:50416178-50416179	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs141421901	chr11:50416187-50416188	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs576133417	chr11:50416197-50416198	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs543165148	chr11:50416208-50416209	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs146991000	chr11:50416213-50416214	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs561498215	chr11:50416227-50416228	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs376611157	chr11:50416230-50416231	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs691412	chr11:50416251-50416252	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs547185371	chr11:50416258-50416259	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs557205668	chr11:50416259-50416260	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs559548645	chr11:50416269-50416270	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs528526935	chr11:50416271-50416272	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs560778688	chr11:50416278-50416279	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs532689129	chr11:50416327-50416328	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs56790322	chr11:50416359-50416360	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs113848253	chr11:50416361-50416362	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs369122462	chr11:50416369-50416370	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs79960583	chr11:50416373-50416374	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs79754931	chr11:50416377-50416378	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs548291387	chr11:50416380-50416381	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs568188857	chr11:50416394-50416395	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs78527752	chr11:50416395-50416396	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs540723442	chr11:50416401-50416402	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs185602870	chr11:50416412-50416413	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs577107460	chr11:50416435-50416436	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs539347802	chr11:50416438-50416439	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs556150701	chr11:50416488-50416489	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs147155542	chr11:50416497-50416498	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs111239041	chr11:50416498-50416499	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs564218972	chr11:50416500-50416501	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs537887695	chr11:50416514-50416515	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs75589627	chr11:50416531-50416532	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs80335466	chr11:50416539-50416540	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs560518929	chr11:50416576-50416577	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs180940636	chr11:50416578-50416579	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs577728881	chr11:50416579-50416580	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs552580502	chr11:50416604-50416605	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs138382955	chr11:50416613-50416614	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Renal cell carcinoma	18194544	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Hirschsprung''s Disease	21712996	CNVD
Follicular lymphoma	20505157	CNVD
Colorectal cancer	21128281	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
small cell lung cancer	20016488	CNVD
Mortal	21835882	CNVD
Autism	22495309	CNVD
Breast cancer	21785460	CNVD
Esophageal cancer	21851588	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	17142309	CNVD
Bipolar disorder	19214233	CNVD
Medulloblastoma	21163964	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:470 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:50406200-50417200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:50408200-50417200	ZNF genes & repeats	Liver	Liver
3	chr11:50410200-50417400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr11:50410200-50417800	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr11:50416600-50417200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:50418800-50424200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr11:50419600-50423400	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr11:50419600-50431000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:50420000-50423600	ZNF genes & repeats	Liver	Liver
10	chr11:50420200-50421200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:50423000-50426000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr11:50423600-50425400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:50426000-50427000	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr11:50428000-50428800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr11:50435400-50442800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:50436000-50438200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr11:50437400-50438000	ZNF genes & repeats	HepG2	liver
18	chr11:50437600-50438000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
19	chr11:50437600-50438000	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr11:50437600-50438000	ZNF genes & repeats	HUVEC	blood vessel
21	chr11:50437600-50438200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:50437600-50444000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
23	chr11:50437800-50438000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
24	chr11:50437800-50438000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
25	chr11:50437800-50438000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:50437800-50438000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:50437800-50438000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:50437800-50438000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:50437800-50438000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr11:50437800-50438000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:50437800-50438000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
32	chr11:50437800-50438000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:50437800-50438000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
34	chr11:50437800-50438000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
35	chr11:50437800-50438000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
36	chr11:50437800-50438000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr11:50437800-50438000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:50437800-50438000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
39	chr11:50437800-50438000	ZNF genes & repeats	Brain Anterior Caudate	brain
40	chr11:50437800-50438000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
41	chr11:50437800-50438000	ZNF genes & repeats	Brain Substantia Nigra	brain
42	chr11:50437800-50438000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
43	chr11:50437800-50438000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
44	chr11:50437800-50438000	ZNF genes & repeats	Left Ventricle	heart
45	chr11:50437800-50438000	ZNF genes & repeats	Small Intestine	intestine
46	chr11:50437800-50438000	ZNF genes & repeats	Stomach Mucosa	stomach
47	chr11:50437800-50438000	ZNF genes & repeats	HSMMtube	muscle
48	chr11:50437800-50438200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
49	chr11:50437800-50438200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
50	chr11:50437800-50438400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links