Variant report

Variant	nsv555212
Chromosome Location	chr11:65302893-65307856
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:654)
CpG islands
(count:490)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:654 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr11:65306340-65306689	H1-hESC	embryonic stem cell:	n/a	n/a
2	ATF2	chr11:65307632-65308275	GM12878	blood:	n/a	n/a
3	ATF2	chr11:65307666-65308170	GM12878	blood:	n/a	n/a
4	BACH1	chr11:65307823-65307979	K562	blood:	n/a	n/a
5	BACH1	chr11:65306552-65308642	H1-hESC	embryonic stem cell:	n/a	n/a
6	BCL3	chr11:65304726-65305378	A549	lung:	n/a	chr11:65304780-65304793
7	BCL3	chr11:65306972-65307292	GM12878	blood:	n/a	n/a
8	BCL3	chr11:65306484-65306830	GM12878	blood:	n/a	n/a
9	BCL3	chr11:65307636-65308628	A549	lung:	n/a	chr11:65308316-65308329 chr11:65308271-65308284 chr11:65307943-65307952
10	BCL3	chr11:65307673-65308736	A549	lung:	n/a	chr11:65308316-65308329 chr11:65308271-65308284 chr11:65307943-65307952
11	BCLAF1	chr11:65307706-65308230	GM12878	blood:	n/a	chr11:65307943-65307952
12	BCLAF1	chr11:65307656-65308685	GM12878	blood:	n/a	chr11:65308316-65308329 chr11:65308271-65308284 chr11:65307943-65307952
13	BHLHE40	chr11:65307688-65308646	K562	blood:	n/a	chr11:65308243-65308259 chr11:65308113-65308129
14	BHLHE40	chr11:65307621-65308613	GM12878	blood:	n/a	chr11:65308243-65308259 chr11:65308113-65308129
15	BRCA1	chr11:65307672-65307813	Hela-S3	cervix:	n/a	n/a
16	BRCA1	chr11:65307831-65308039	GM12878	blood:	n/a	n/a
17	BRCA1	chr11:65307061-65307128	H1-hESC	embryonic stem cell:	n/a	n/a
18	CBX3	chr11:65307648-65308699	K562	blood:	n/a	n/a
19	CCNT2	chr11:65306096-65306126	K562	blood:	n/a	n/a
20	CCNT2	chr11:65307602-65308635	K562	blood:	n/a	chr11:65308191-65308200 chr11:65307673-65307682
21	CEBPB	chr11:65307639-65308146	GM12878	blood:	n/a	n/a
22	CHD1	chr11:65307685-65308173	GM12878	blood:	n/a	n/a
23	CHD2	chr11:65307572-65308635	Hela-S3	cervix:	n/a	chr11:65308309-65308319
24	CHD2	chr11:65307739-65308718	GM12878	blood:	n/a	chr11:65308309-65308319
25	CHD2	chr11:65307394-65307486	H1-hESC	embryonic stem cell:	n/a	n/a
26	CREB1	chr11:65307109-65308664	H1-hESC	embryonic stem cell:	n/a	n/a
27	CREB1	chr11:65307821-65308392	A549	lung:	n/a	n/a
28	CTBP2	chr11:65306801-65307540	H1-hESC	embryonic stem cell:	n/a	n/a
29	CTCF	chr11:65307680-65307830	HVMF	connective:	n/a	n/a
30	CTCF	chr11:65307100-65307250	NHEK	skin:	n/a	n/a
31	CTCF	chr11:65307694-65308056	A549	lung:	n/a	chr11:65307933-65307951 chr11:65307936-65307949 chr11:65307936-65307949
32	CTCF	chr11:65307636-65308113	NHEK	skin:	n/a	chr11:65307933-65307951 chr11:65307936-65307949 chr11:65307936-65307949
33	CTCF	chr11:65306565-65306583	H1-hESC	embryonic stem cell:	n/a	n/a
34	CTCF	chr11:65306519-65306524	H1-hESC	embryonic stem cell:	n/a	n/a
35	CTCF	chr11:65307700-65307850	NHEK	skin:	n/a	n/a
36	CTCF	chr11:65307700-65307850	HBMEC	blood vessel:	n/a	n/a
37	CTCF	chr11:65307720-65307870	GM12871	blood:	n/a	n/a
38	CTCF	chr11:65307700-65307850	HEK293	kidney:	n/a	n/a
39	CTCF	chr11:65307740-65307890	GM12874	blood:	n/a	n/a
40	CTCF	chr11:65307720-65307870	GM12868	blood:	n/a	n/a
41	CTCF	chr11:65307720-65307870	HCPEpiC	choroid plexus:	n/a	n/a
42	CTCF	chr11:65307720-65307870	GM12865	blood:	n/a	n/a
43	CTCF	chr11:65307559-65308790	K562	blood:	n/a	chr11:65307933-65307951 chr11:65307936-65307949 chr11:65307936-65307949
44	CTCF	chr11:65307760-65307910	GM12872	blood:	n/a	n/a
45	CTCF	chr11:65307380-65307530	GM12870	blood:	n/a	n/a
46	CTCF	chr11:65307137-65308930	HCT-116	colon:	n/a	chr11:65307933-65307951 chr11:65307936-65307949 chr11:65307936-65307949
47	CTCF	chr11:65307578-65308136	GM12892	blood:	n/a	chr11:65307933-65307951 chr11:65307936-65307949 chr11:65307936-65307949
48	CTCF	chr11:65307720-65307870	GM12878	blood:	n/a	n/a
49	CTCF	chr11:65307660-65307810	BE2_C	brain:	n/a	n/a
50	CTCF	chr11:65307680-65307830	SAEC	small airway:	n/a	n/a

(count:490 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:65307006-65307056	HCF	heart:	n/a
2	chr11:65307791-65307841	RPTEC	kidney:	n/a
3	chr11:65307006-65307056	HCF	heart:	n/a
4	chr11:65307791-65307841	RPTEC	kidney:	n/a
5	chr11:65307006-65307056	NT2-D1	testis:	n/a
6	chr11:65307006-65307056	AG10803	skin:	n/a
7	chr11:65306116-65306166	MCF10A-Er-Src	breast:	n/a
8	chr11:65306186-65306236	HEEpiC	esophagus:	n/a
9	chr11:65306934-65306984	PANC-1	pancreas:	n/a
10	chr11:65306186-65306236	AG04449	skin:	fetal
11	chr11:65306186-65306236	HPAEpiC	pulmonary alveolar:	n/a
12	chr11:65306116-65306166	PrEC	prostate:	n/a
13	chr11:65306934-65306984	HCT-116	colon:	n/a
14	chr11:65307791-65307841	PANC-1	pancreas:	n/a
15	chr11:65305575-65305625	HPAEpiC	pulmonary alveolar:	n/a
16	chr11:65307006-65307056	GM12892	blood:	n/a
17	chr11:65307006-65307056	Jurkat	blood:	n/a
18	chr11:65306731-65306781	HRE	kidney:	n/a
19	chr11:65306116-65306166	GM19239	blood:	n/a
20	chr11:65307006-65307056	AG09319	gingival:	n/a
21	chr11:65305575-65305625	Jurkat	blood:	n/a
22	chr11:65306186-65306236	HCF	heart:	n/a
23	chr11:65307006-65307056	SK-N-SH	brain:	n/a
24	chr11:65305575-65305625	LNCaP	prostate:	n/a
25	chr11:65307791-65307841	AG09319	gingival:	n/a
26	chr11:65306116-65306166	T-47D	breast:	n/a
27	chr11:65306731-65306781	AG09319	gingival:	n/a
28	chr11:65305575-65305625	H1-hESC	embryonic stem cell:	embryo
29	chr11:65306186-65306236	Hepatocyte	liver:	n/a
30	chr11:65307616-65307666	NH-A	brain:	n/a
31	chr11:65306186-65306236	T-47D	breast:	n/a
32	chr11:65305575-65305625	HCPEpiC	choroid plexus:	n/a
33	chr11:65305575-65305625	GM12891	blood:	n/a
34	chr11:65306934-65306984	HCF	heart:	n/a
35	chr11:65307006-65307056	Hela-S3	cervix:	n/a
36	chr11:65306116-65306166	SK-N-SH	brain:	n/a
37	chr11:65306186-65306236	NH-A	brain:	n/a
38	chr11:65307791-65307841	NT2-D1	testis:	n/a
39	chr11:65307616-65307666	HPAEpiC	pulmonary alveolar:	n/a
40	chr11:65306731-65306781	NT2-D1	testis:	n/a
41	chr11:65305575-65305625	HAEpiC	amniotic membrane:	n/a
42	chr11:65307616-65307666	A549	lung:	n/a
43	chr11:65306731-65306781	K562	blood:	n/a
44	chr11:65306186-65306236	HL-60	blood:	n/a
45	chr11:65306731-65306781	IMR90	lung:	fetal
46	chr11:65306116-65306166	ECC-1	luminal epithelium:	n/a
47	chr11:65307616-65307666	ovcar-3	ovarian:	n/a
48	chr11:65306186-65306236	AG10803	skin:	n/a
49	chr11:65306186-65306236	HRCEpiC	kidney:	n/a
50	chr11:65305575-65305625	HUVEC	blood vessel:	n/a

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65262833..65264423-chr11:65305627..65307751,2	K562	blood:
2	chr11:65307609..65308998-chr11:65336892..65338725,9	K562	blood:
3	chr11:65307310..65307872-chr11:65360978..65361533,2	MCF-7	breast:
4	chr11:65189854..65192035-chr11:65305464..65309123,3	K562	blood:
5	chr11:65306856..65307488-chr17:73150357..73151051,2	Hela-S3	cervix:
6	chr11:65306479..65309303-chr5:10247983..10249958,2	MCF-7	breast:
7	chr11:65266245..65270118-chr11:65305867..65309860,5	MCF-7	breast:
8	chr11:65307697..65309026-chr3:64008900..64009738,3	MCF-7	breast:
9	chr11:65307403..65309183-chr11:65336934..65338289,13	MCF-7	breast:
10	chr11:65306570..65308318-chr11:65381821..65384190,3	K562	blood:
11	chr1:29063672..29064279-chr11:65307848..65308494,2	HCT-116	colon:
12	chr11:65307335..65308296-chr17:73775501..73776065,2	HCT-116	colon:
13	chr11:65307252..65310035-chr11:65625535..65628177,3	K562	blood:
14	chr11:65306623..65309907-chr11:65380382..65384254,6	MCF-7	breast:
15	chr11:65183635..65190622-chr11:65305653..65310980,8	MCF-7	breast:
16	chr11:65307733..65308892-chr11:65339050..65340029,8	K562	blood:
17	chr11:65307648..65308488-chr11:65318954..65319482,2	MCF-7	breast:
18	chr11:65187744..65191441-chr11:65307194..65309813,3	MCF-7	breast:
19	chr11:65307312..65308926-chr11:65339023..65340083,15	MCF-7	breast:
20	chr11:65302994..65303607-chr17:57784255..57785207,2	HCT-116	colon:
21	chr11:65263261..65267812-chr11:65306192..65309215,4	MCF-7	breast:
22	chr11:65100032..65102632-chr11:65307572..65309259,3	MCF-7	breast:
23	chr11:65307679..65310014-chr11:65429997..65432824,2	MCF-7	breast:

No data

Variant related genes	Relation type
SCYL1	TF binding region
SCYL1	CpG island
ENSG00000141378	chromatin interactions
ENSG00000173338	chromatin interactions
ENSG00000245532	chromatin interactions
ENSG00000173039	chromatin interactions
ENSG00000062716	chromatin interactions
ENSG00000270117	chromatin interactions
ENSG00000168056	chromatin interactions
ENSG00000163636	chromatin interactions
ENSG00000173327	chromatin interactions
ENSG00000133884	chromatin interactions
ENSG00000198492	chromatin interactions
ENSG00000251562	chromatin interactions
ENSG00000172757	chromatin interactions
ENSG00000189159	chromatin interactions
ENSG00000260233	chromatin interactions
ENSG00000176973	chromatin interactions
ENSG00000132475	chromatin interactions
ENSG00000173465	chromatin interactions
ENSG00000172732	chromatin interactions
ENSG00000197136	chromatin interactions
ENSG00000248968	chromatin interactions

Extended variants
information (count: 225 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:225 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs947791	chr11:65302893-65302894	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs372529161	chr11:65302897-65302898	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs557269559	chr11:65302927-65302928	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs577101281	chr11:65302947-65302948	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs78406413	chr11:65302971-65302972	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs3831381	chr11:65303022-65303023	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs187422245	chr11:65303026-65303027	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs528087241	chr11:65303027-65303028	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs541902542	chr11:65303069-65303070	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs142255379	chr11:65303071-65303072	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs572741284	chr11:65303099-65303100	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs530211252	chr11:65303134-65303135	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs549997175	chr11:65303183-65303184	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs569932481	chr11:65303257-65303258	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs558475810	chr11:65303273-65303274	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs150830865	chr11:65303275-65303276	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs190563553	chr11:65303288-65303289	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs372392724	chr11:65303331-65303332	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs534748330	chr11:65303342-65303343	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs117707504	chr11:65303353-65303354	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs183121933	chr11:65303417-65303418	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs201994919	chr11:65303419-65303420	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs76955800	chr11:65303420-65303421	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs55977709	chr11:65303473-65303474	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs371321661	chr11:65303490-65303491	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs78069132	chr11:65303535-65303536	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs374754187	chr11:65303544-65303545	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs369976947	chr11:65303570-65303571	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs372352176	chr11:65303581-65303582	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs376376282	chr11:65303600-65303601	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs201987433	chr11:65303605-65303606	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs374245393	chr11:65303607-65303608	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs377541875	chr11:65303645-65303646	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs373034887	chr11:65303655-65303656	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs377420741	chr11:65303690-65303691	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs201331132	chr11:65303718-65303719	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs374509053	chr11:65303731-65303732	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs553035759	chr11:65303746-65303747	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs377549319	chr11:65303776-65303777	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs572796072	chr11:65303785-65303786	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs370763826	chr11:65303819-65303820	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs201353161	chr11:65303820-65303821	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs35452002	chr11:65303836-65303837	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs374411858	chr11:65303840-65303841	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs574960789	chr11:65303843-65303844	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs35209887	chr11:65303847-65303848	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs543925606	chr11:65303859-65303860	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs113307835	chr11:65303927-65303928	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs532605796	chr11:65303976-65303977	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs552824859	chr11:65304025-65304026	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Pituitary adenoma	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	16417655	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	17217626	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	21045282	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Anaplastic thyroid cancer	18753363	CNVD
Prostate cancer	18779856	CNVD
Cancer	17160897	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Schizophrenia	23813976	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:504 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65293600-65305600	Weak transcription	Right Atrium	heart
2	chr11:65293600-65307600	Weak transcription	Small Intestine	intestine
3	chr11:65294000-65305800	Strong transcription	Fetal Brain Female	brain
4	chr11:65294000-65305800	Strong transcription	Fetal Intestine Large	intestine
5	chr11:65294000-65306400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:65294000-65306400	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr11:65294000-65306400	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:65294000-65306600	Weak transcription	Fetal Heart	heart
9	chr11:65294000-65306800	Strong transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:65294000-65307000	Strong transcription	Lung	lung
11	chr11:65294000-65307200	Strong transcription	Brain Cingulate Gyrus	brain
12	chr11:65294200-65304800	Strong transcription	Fetal Muscle Leg	muscle
13	chr11:65294200-65306200	Strong transcription	Brain Hippocampus Middle	brain
14	chr11:65294200-65306200	Weak transcription	Fetal Brain Male	brain
15	chr11:65294200-65306200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:65294200-65306400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr11:65294200-65306800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:65294200-65307200	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:65294400-65306000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:65294400-65306200	Strong transcription	Fetal Intestine Small	intestine
21	chr11:65294400-65306400	Strong transcription	Brain Germinal Matrix	brain
22	chr11:65294400-65306400	Strong transcription	Brain Substantia Nigra	brain
23	chr11:65294400-65306600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:65294400-65307000	Strong transcription	Fetal Stomach	stomach
25	chr11:65294400-65307200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:65294400-65307400	Strong transcription	NHLF	lung
27	chr11:65294600-65304600	Strong transcription	Fetal Muscle Trunk	muscle
28	chr11:65294600-65306000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:65294600-65306400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:65294600-65306400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:65294600-65307000	Strong transcription	Adipose Nuclei	Adipose
32	chr11:65294600-65307200	Strong transcription	Placenta	Placenta
33	chr11:65294800-65304600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:65294800-65306400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:65294800-65306600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:65294800-65307400	Strong transcription	Osteobl	bone
37	chr11:65295000-65306400	Strong transcription	Primary B cells from peripheral blood	blood
38	chr11:65295200-65306200	Strong transcription	Right Ventricle	heart
39	chr11:65295200-65306600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:65296000-65306600	Strong transcription	Brain Anterior Caudate	brain
41	chr11:65296400-65306600	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr11:65296800-65305400	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr11:65297000-65305000	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:65297000-65306400	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr11:65297200-65305000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr11:65297200-65306800	Strong transcription	Pancreas	Pancrea
47	chr11:65297400-65305400	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:65297400-65305600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:65297400-65307200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:65297400-65311200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links