Variant report

Variant	nsv555610
Chromosome Location	chr11:83831922-83842498
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 401 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:401 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs17146848	chr11:83831922-83831923	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs114721544	chr11:83831929-83831930	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs531436013	chr11:83831974-83831975	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs554906962	chr11:83831978-83831979	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs567230460	chr11:83831990-83831991	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs549946736	chr11:83832002-83832003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs374966729	chr11:83832033-83832034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs138859892	chr11:83832046-83832047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs183951175	chr11:83832078-83832079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs187425523	chr11:83832107-83832108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs118111464	chr11:83832166-83832167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112480281	chr11:83832181-83832182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs573254606	chr11:83832194-83832195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs192169875	chr11:83832256-83832257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs184007940	chr11:83832272-83832273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs188663519	chr11:83832273-83832274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs75343819	chr11:83832277-83832278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs563158878	chr11:83832361-83832362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs533388608	chr11:83832399-83832400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs73515738	chr11:83832410-83832411	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs566458093	chr11:83832471-83832472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs10792723	chr11:83832500-83832501	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs71468360	chr11:83832627-83832628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs11233908	chr11:83832635-83832636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs549725523	chr11:83832651-83832652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs368845510	chr11:83832668-83832669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs567944016	chr11:83832672-83832673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs571492860	chr11:83832674-83832675	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs538470892	chr11:83832691-83832692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs553892190	chr11:83832705-83832706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs573262064	chr11:83832706-83832707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs375721979	chr11:83832762-83832763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs540775518	chr11:83832769-83832770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs549710153	chr11:83832776-83832777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs555887679	chr11:83832793-83832794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs574115826	chr11:83832794-83832795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs189229880	chr11:83832851-83832852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs563058577	chr11:83832894-83832895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs182268347	chr11:83832896-83832897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs147072363	chr11:83832916-83832917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs568275251	chr11:83833090-83833091	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs545280174	chr11:83833091-83833092	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs535707335	chr11:83833226-83833227	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs527872121	chr11:83833292-83833293	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs548705987	chr11:83833293-83833294	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs560630460	chr11:83833303-83833304	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs531231413	chr11:83833318-83833319	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs549332540	chr11:83833319-83833320	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs34313946	chr11:83833337-83833338	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs571460675	chr11:83833354-83833355	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Ovarian neoplasms	16753589	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	20844748	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Colorectal cancer	16912164	CNVD
Mental retardation	17847001	CNVD
Melanoma	19509136	CNVD
Sudden cardiac death	19188705	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Cancer	20164920	CNVD
Obesity	20622171	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164919	CNVD
Developmental delay	21147756	CNVD
Bipolar disorder	19114987	CNVD
Acute lymphoblastic leukemia	18458336	CNVD

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83828600-83834400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83831200-83839600	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83831400-83834000	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83831600-83833000	Weak transcription	Brain Angular Gyrus	brain
5	chr11:83831800-83832000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr11:83832000-83833600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:83833000-83835600	Enhancers	Brain Angular Gyrus	brain
8	chr11:83833600-83834600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:83834000-83834800	Enhancers	Brain Hippocampus Middle	brain
10	chr11:83834000-83835200	Enhancers	Brain Substantia Nigra	brain
11	chr11:83834200-83835400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:83834400-83834800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:83834400-83835800	Enhancers	Brain Cingulate Gyrus	brain
14	chr11:83834600-83835000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:83834600-83839600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:83834800-83835200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:83834800-83838400	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:83835200-83835400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:83835200-83838600	Weak transcription	Brain Substantia Nigra	brain
20	chr11:83835400-83842000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:83835600-83836600	Weak transcription	Brain Angular Gyrus	brain
22	chr11:83835800-83838600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:83836600-83837400	Enhancers	Brain Angular Gyrus	brain
24	chr11:83837400-83840200	Weak transcription	Brain Angular Gyrus	brain
25	chr11:83838400-83839000	Enhancers	Brain Hippocampus Middle	brain
26	chr11:83838600-83840400	Enhancers	Brain Substantia Nigra	brain
27	chr11:83838600-83840600	Enhancers	Brain Cingulate Gyrus	brain
28	chr11:83839000-83839600	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:83839200-83840000	Enhancers	Stomach Smooth Muscle	stomach
30	chr11:83839400-83840600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr11:83839600-83840400	Enhancers	Brain Hippocampus Middle	brain
32	chr11:83839600-83840600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:83839600-83840800	Enhancers	Brain Anterior Caudate	brain
34	chr11:83839600-83840800	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr11:83840200-83840600	Enhancers	Brain Angular Gyrus	brain
36	chr11:83840200-83840600	Enhancers	Fetal Stomach	stomach
37	chr11:83840400-83841800	Weak transcription	Brain Substantia Nigra	brain
38	chr11:83840400-83845000	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:83840600-83842000	Weak transcription	Brain Angular Gyrus	brain
40	chr11:83840800-83842000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:83840800-83847800	Weak transcription	Brain Anterior Caudate	brain
42	chr11:83841200-83841400	Enhancers	Fetal Heart	heart
43	chr11:83841400-83845200	Weak transcription	Fetal Heart	heart
44	chr11:83841800-83842600	Enhancers	Brain Substantia Nigra	brain
45	chr11:83842000-83842400	Enhancers	Brain Angular Gyrus	brain
46	chr11:83842000-83842400	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr11:83842000-83842800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:83842400-83847600	Weak transcription	Brain Angular Gyrus	brain
49	chr11:83842400-83847800	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links