Variant report

Variant	nsv555631
Chromosome Location	chr11:85266321-85271345
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 173 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:173 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4944523	chr11:85266321-85266322	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs115919453	chr11:85266330-85266331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs142961244	chr11:85266340-85266341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs190699719	chr11:85266349-85266350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs538650479	chr11:85266400-85266401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs562950969	chr11:85266462-85266463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs527799079	chr11:85266467-85266468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs145379726	chr11:85266493-85266494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs565619146	chr11:85266500-85266501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs182987384	chr11:85266525-85266526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs554460000	chr11:85266536-85266537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs187858799	chr11:85266559-85266560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs192684632	chr11:85266607-85266608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs558328783	chr11:85266608-85266609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs576918717	chr11:85266697-85266698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs183379822	chr11:85266731-85266732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs4943923	chr11:85266793-85266794	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs540755993	chr11:85266854-85266855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs187379806	chr11:85266877-85266878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs574499399	chr11:85266878-85266879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs545522007	chr11:85266998-85266999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs138315587	chr11:85267038-85267039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs76690915	chr11:85267071-85267072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs561568973	chr11:85267115-85267116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs112367883	chr11:85267141-85267142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs115328414	chr11:85267173-85267174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs149213186	chr11:85267183-85267184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs143412342	chr11:85267190-85267191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs193169436	chr11:85267241-85267242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs139000690	chr11:85267242-85267243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184628762	chr11:85267243-85267244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs113247196	chr11:85267259-85267260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs141568214	chr11:85267277-85267278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs569942405	chr11:85267293-85267294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs147050293	chr11:85267328-85267329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs1504027	chr11:85267366-85267367	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs549291219	chr11:85267391-85267392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs570437126	chr11:85267430-85267431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs534679965	chr11:85267484-85267485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs532033591	chr11:85267493-85267494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs553124353	chr11:85267499-85267500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs370503714	chr11:85267540-85267541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs574436512	chr11:85267544-85267545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs575854703	chr11:85267658-85267659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs117739796	chr11:85267698-85267699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs138402819	chr11:85267715-85267716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs561177230	chr11:85267726-85267727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs141916513	chr11:85267740-85267741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs373663605	chr11:85267764-85267765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs549824749	chr11:85267767-85267768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Ovarian neoplasms	16753589	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	20844748	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Colorectal cancer	16912164	CNVD
Mental retardation	17847001	CNVD
Melanoma	19509136	CNVD
Sudden cardiac death	19188705	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Bipolar disorder	19114987	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Ductal carcinoma	22052326	CNVD
Obesity	20622171	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85248800-85292000	Weak transcription	Aorta	Aorta
2	chr11:85252200-85266400	Weak transcription	Ovary	ovary
3	chr11:85260400-85266400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:85260400-85268600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:85261400-85284000	Weak transcription	Left Ventricle	heart
6	chr11:85268600-85269400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:85269600-85270000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:85270000-85272000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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