Variant report

Variant	nsv555657
Chromosome Location	chr11:85891661-85898178
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:85849886..85854014-chr11:85893559..85897041,3	K562	blood:
2	chr11:85861500..85864478-chr11:85889998..85891794,2	K562	blood:
3	chr11:85827660..85829775-chr11:85890965..85893540,2	K562	blood:
4	chr11:85891211..85894125-chr11:85910067..85912680,3	K562	blood:
5	chr11:85857814..85859738-chr11:85892040..85894023,2	K562	blood:
6	chr11:85836520..85838381-chr11:85894260..85896246,2	K562	blood:
7	chr11:85777970..85780029-chr11:85892784..85894439,2	K562	blood:
8	chr11:85894603..85896311-chr11:85907931..85910681,2	K562	blood:
9	chr11:85872408..85874802-chr11:85892436..85894621,2	K562	blood:
10	chr11:85753896..85756405-chr11:85894218..85896804,2	K562	blood:
11	chr11:85780298..85782257-chr11:85893128..85895149,2	K562	blood:
12	chr11:85894174..85895049-chr11:85903549..85904117,2	Hela-S3	cervix:
13	chr11:85853323..85855104-chr11:85891791..85893559,2	K562	blood:
14	chr11:85890926..85895677-chr11:85901056..85906162,7	K562	blood:
15	chr11:85887077..85889450-chr11:85892380..85895254,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254699	chromatin interactions
ENSG00000200877	chromatin interactions
ENSG00000073921	chromatin interactions

Extended variants
information (count: 250 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:250 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11602811	chr11:85891661-85891662	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs183249564	chr11:85891674-85891675	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs538190057	chr11:85891688-85891689	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs187562801	chr11:85891689-85891690	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs539842297	chr11:85891724-85891725	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs566854879	chr11:85891743-85891744	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs535865185	chr11:85891769-85891770	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs141182066	chr11:85891793-85891794	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs150748921	chr11:85891796-85891797	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs192249156	chr11:85891837-85891838	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs183626417	chr11:85891959-85891960	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs139851512	chr11:85891994-85891995	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs567019938	chr11:85891997-85891998	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs540511588	chr11:85891998-85891999	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs118165688	chr11:85892003-85892004	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs528051930	chr11:85892016-85892017	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs188562678	chr11:85892053-85892054	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs149399955	chr11:85892068-85892069	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs192767971	chr11:85892093-85892094	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs530509847	chr11:85892105-85892106	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs116083942	chr11:85892119-85892120	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs184020767	chr11:85892136-85892137	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs186871364	chr11:85892145-85892146	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs144808780	chr11:85892188-85892189	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs140187768	chr11:85892198-85892199	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs545465753	chr11:85892204-85892205	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs374717412	chr11:85892226-85892227	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs368206999	chr11:85892256-85892257	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs535800951	chr11:85892281-85892282	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs549118364	chr11:85892303-85892304	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs569281897	chr11:85892304-85892305	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs537930933	chr11:85892309-85892310	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs34177960	chr11:85892351-85892352	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs558266142	chr11:85892391-85892392	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs77304109	chr11:85892415-85892416	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs534147248	chr11:85892416-85892417	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs554000044	chr11:85892487-85892488	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs574005904	chr11:85892488-85892489	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs543348881	chr11:85892517-85892518	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs191271119	chr11:85892595-85892596	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs145665337	chr11:85892611-85892612	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs543955676	chr11:85892639-85892640	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs375196024	chr11:85892675-85892676	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs61904268	chr11:85892706-85892707	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs533130943	chr11:85892707-85892708	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs183755414	chr11:85892746-85892747	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs189648891	chr11:85892747-85892748	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs560447832	chr11:85892766-85892767	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs373557110	chr11:85892800-85892801	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs537722805	chr11:85892812-85892813	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	21364760	CNVD
Ovarian neoplasms	16753589	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Sudden cardiac death	19188705	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Ductal carcinoma	22052326	CNVD
Obesity	20622171	CNVD
small cell lung cancer	20016488	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Attention deficit hyperactivity disorder	22241247	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17133270	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:189 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85885200-85895200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr11:85886000-85894000	Weak transcription	Esophagus	oesophagus
3	chr11:85886000-85894000	Weak transcription	Pancreas	Pancrea
4	chr11:85886000-85903000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:85886200-85893800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:85886800-85894000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:85887000-85892800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:85887000-85894000	Weak transcription	Right Atrium	heart
9	chr11:85887200-85894200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr11:85887200-85898000	Weak transcription	Brain Anterior Caudate	brain
11	chr11:85887800-85892400	Enhancers	Adipose Nuclei	Adipose
12	chr11:85887800-85893800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:85888000-85893400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:85888000-85894000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:85888600-85893400	Weak transcription	Fetal Intestine Large	intestine
16	chr11:85888800-85893000	Weak transcription	Fetal Intestine Small	intestine
17	chr11:85888800-85893400	Weak transcription	HMEC	breast
18	chr11:85888800-85893600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:85888800-85893800	Enhancers	K562	blood
20	chr11:85888800-85894000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:85888800-85894000	Weak transcription	A549	lung
22	chr11:85888800-85894000	Weak transcription	GM12878-XiMat	blood
23	chr11:85888800-85894000	Enhancers	Hela-S3	cervix
24	chr11:85888800-85894200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:85888800-85894200	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:85888800-85894200	Weak transcription	Spleen	Spleen
27	chr11:85888800-85895600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:85888800-85896400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:85889000-85895800	Weak transcription	Psoas Muscle	Psoas
30	chr11:85889400-85895200	Enhancers	Primary hematopoietic stem cells	blood
31	chr11:85890400-85893400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr11:85890600-85894200	Weak transcription	Small Intestine	intestine
33	chr11:85890600-85894400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:85890600-85895800	Weak transcription	Ovary	ovary
35	chr11:85890800-85894000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:85890800-85894000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:85890800-85894000	Weak transcription	Placenta	Placenta
38	chr11:85890800-85894200	Weak transcription	NHDF-Ad	bronchial
39	chr11:85890800-85895400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:85890800-85895800	Weak transcription	Left Ventricle	heart
41	chr11:85891000-85895600	Weak transcription	Fetal Muscle Leg	muscle
42	chr11:85891200-85892200	Enhancers	Primary B cells from cord blood	blood
43	chr11:85891200-85894000	Weak transcription	Lung	lung
44	chr11:85891200-85894800	Weak transcription	Osteobl	bone
45	chr11:85891400-85892000	Enhancers	Thymus	Thymus
46	chr11:85891400-85892200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:85891400-85892400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr11:85891600-85892000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr11:85891600-85892000	Enhancers	Fetal Thymus	thymus
50	chr11:85891600-85892200	Enhancers	Primary T cells from cord blood	blood

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