Variant report

Variant	nsv556135
Chromosome Location	chr11:101399510-101436689
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101401501..101402180-chr15:83292649..83293203,2	MCF-7	breast:

Extended variants
information (count: 1559 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:1559 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3924457	chr11:101399510-101399511	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs147053118	chr11:101399539-101399540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs534106964	chr11:101399541-101399542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs571623502	chr11:101399556-101399557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs577125191	chr11:101399560-101399561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs545979112	chr11:101399561-101399562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs555988391	chr11:101399575-101399576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs112493994	chr11:101399585-101399586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs189174283	chr11:101399615-101399616	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs193072668	chr11:101399618-101399619	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs113951627	chr11:101399623-101399624	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs184639506	chr11:101399640-101399641	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs564406384	chr11:101399642-101399643	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs533361241	chr11:101399647-101399648	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs550306341	chr11:101399726-101399727	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs570149493	chr11:101399733-101399734	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs187580231	chr11:101399758-101399759	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs549185816	chr11:101399822-101399823	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs566084529	chr11:101399867-101399868	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs191238571	chr11:101399902-101399903	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs80009218	chr11:101399908-101399909	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs573736282	chr11:101399936-101399937	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs36027436	chr11:101399938-101399939	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs554117480	chr11:101399992-101399993	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs184206959	chr11:101400019-101400020	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs188531478	chr11:101400025-101400026	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs556363812	chr11:101400045-101400046	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs565343707	chr11:101400103-101400104	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs541937294	chr11:101400163-101400164	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs555143558	chr11:101400166-101400167	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs571725158	chr11:101400167-101400168	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs181660235	chr11:101400210-101400211	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs547435834	chr11:101400214-101400215	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs540585486	chr11:101400253-101400254	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs185074769	chr11:101400281-101400282	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs578028810	chr11:101400296-101400297	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs543753291	chr11:101400395-101400396	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs78845002	chr11:101400411-101400412	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs529435248	chr11:101400466-101400467	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs549470515	chr11:101400480-101400481	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs76616052	chr11:101400510-101400511	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs567733565	chr11:101400522-101400523	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs7101962	chr11:101400552-101400553	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs143235722	chr11:101400598-101400599	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs571659558	chr11:101400635-101400636	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs76558726	chr11:101400647-101400648	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs539755230	chr11:101400657-101400658	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs569104603	chr11:101400675-101400676	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs544710848	chr11:101400679-101400680	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs7940596	chr11:101400697-101400698	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Melanoma	22183965	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Mantle cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal cancer	21851588	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Cancer	20164920	CNVD

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101387600-101400800	Weak transcription	Ovary	ovary
2	chr11:101392400-101402600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:101399200-101399600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:101399200-101399600	Weak transcription	Fetal Intestine Small	intestine
5	chr11:101399600-101400600	Enhancers	Fetal Intestine Large	intestine
6	chr11:101399600-101400600	Enhancers	Fetal Intestine Small	intestine
7	chr11:101399800-101400600	Weak transcription	Aorta	Aorta
8	chr11:101400600-101401000	ZNF genes & repeats	Aorta	Aorta
9	chr11:101400800-101401200	Enhancers	Ovary	ovary
10	chr11:101401200-101425800	Weak transcription	Ovary	ovary
11	chr11:101402600-101402800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:101416400-101437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:101421600-101424800	Enhancers	Fetal Lung	lung
14	chr11:101422200-101423200	Enhancers	NHDF-Ad	bronchial
15	chr11:101422400-101423000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr11:101422400-101423200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:101422400-101427400	Enhancers	NHLF	lung
18	chr11:101423000-101423200	Enhancers	Colon Smooth Muscle	Colon
19	chr11:101423200-101423600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:101423200-101423600	Weak transcription	NHDF-Ad	bronchial
21	chr11:101423200-101423800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr11:101423200-101424200	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:101423400-101424200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:101423400-101425400	Enhancers	Primary B cells from cord blood	blood
25	chr11:101423600-101426400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:101423600-101426800	Enhancers	NHDF-Ad	bronchial
27	chr11:101423800-101424000	Active TSS	GM12878-XiMat	blood
28	chr11:101423800-101424400	Enhancers	Primary hematopoietic stem cells	blood
29	chr11:101423800-101424600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr11:101423800-101425000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:101423800-101425800	Enhancers	Primary B cells from peripheral blood	blood
32	chr11:101424000-101424800	Flanking Active TSS	GM12878-XiMat	blood
33	chr11:101424000-101425000	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr11:101424200-101424400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr11:101424200-101424400	Enhancers	Colon Smooth Muscle	Colon
36	chr11:101424200-101425800	Enhancers	Fetal Heart	heart
37	chr11:101424400-101424800	Flanking Active TSS	Colon Smooth Muscle	Colon
38	chr11:101424400-101437200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr11:101424600-101425800	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr11:101424800-101425400	Enhancers	GM12878-XiMat	blood
41	chr11:101424800-101426200	Enhancers	Colon Smooth Muscle	Colon
42	chr11:101425600-101426400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:101425600-101426800	Enhancers	Muscle Satellite Cultured Cells	--
44	chr11:101425800-101426200	Enhancers	Ovary	ovary
45	chr11:101426200-101429200	Weak transcription	Ovary	ovary
46	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:101426800-101431000	Weak transcription	NHDF-Ad	bronchial
48	chr11:101427400-101433600	Weak transcription	NHLF	lung
49	chr11:101429200-101429600	Enhancers	Ovary	ovary
50	chr11:101429600-101437400	Weak transcription	Ovary	ovary

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