Variant report

Variant	nsv556138
Chromosome Location	chr11:101409478-101436997
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1209 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:1209 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7118839	chr11:101409478-101409479	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs530513898	chr11:101409479-101409480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs186401964	chr11:101409498-101409499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs145318230	chr11:101409573-101409574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs536979337	chr11:101409596-101409597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs547279527	chr11:101409714-101409715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs11224826	chr11:101409718-101409719	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs143988254	chr11:101409735-101409736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs555240939	chr11:101409740-101409741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs148670273	chr11:101409767-101409768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs4457714	chr11:101409786-101409787	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs537942503	chr11:101409804-101409805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs199584174	chr11:101409825-101409826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs554568548	chr11:101409827-101409828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs12792271	chr11:101409855-101409856	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs10895132	chr11:101409874-101409875	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs142310473	chr11:101409898-101409899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs11224827	chr11:101409902-101409903	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs11224828	chr11:101409953-101409954	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs117912442	chr11:101409957-101409958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs530658896	chr11:101409959-101409960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs10895133	chr11:101409980-101409981	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs372315378	chr11:101409990-101409991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs79548044	chr11:101409998-101409999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs529684758	chr11:101410004-101410005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs151270538	chr11:101410010-101410011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs140627281	chr11:101410026-101410027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs527626715	chr11:101410035-101410036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs532683413	chr11:101410044-101410045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs540926029	chr11:101410064-101410065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs560778988	chr11:101410089-101410090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs529826630	chr11:101410112-101410113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs56743893	chr11:101410134-101410135	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs569328460	chr11:101410145-101410146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs10895134	chr11:101410162-101410163	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs144202299	chr11:101410176-101410177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs58632055	chr11:101410204-101410205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs532012316	chr11:101410232-101410233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs554174891	chr11:101410244-101410245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs146560088	chr11:101410255-101410256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs544952580	chr11:101410270-101410271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs558751444	chr11:101410298-101410299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs575475820	chr11:101410322-101410323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs76129809	chr11:101410323-101410324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs544345762	chr11:101410370-101410371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs572496143	chr11:101410377-101410378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs189723029	chr11:101410397-101410398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs540270300	chr11:101410423-101410424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs559888650	chr11:101410439-101410440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs552108835	chr11:101410449-101410450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Melanoma	22183965	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Mantle cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal cancer	21851588	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Cancer	20164920	CNVD

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101401200-101425800	Weak transcription	Ovary	ovary
2	chr11:101416400-101437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:101421600-101424800	Enhancers	Fetal Lung	lung
4	chr11:101422200-101423200	Enhancers	NHDF-Ad	bronchial
5	chr11:101422400-101423000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:101422400-101423200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:101422400-101427400	Enhancers	NHLF	lung
8	chr11:101423000-101423200	Enhancers	Colon Smooth Muscle	Colon
9	chr11:101423200-101423600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:101423200-101423600	Weak transcription	NHDF-Ad	bronchial
11	chr11:101423200-101423800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr11:101423200-101424200	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:101423400-101424200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:101423400-101425400	Enhancers	Primary B cells from cord blood	blood
15	chr11:101423600-101426400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:101423600-101426800	Enhancers	NHDF-Ad	bronchial
17	chr11:101423800-101424000	Active TSS	GM12878-XiMat	blood
18	chr11:101423800-101424400	Enhancers	Primary hematopoietic stem cells	blood
19	chr11:101423800-101424600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr11:101423800-101425000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr11:101423800-101425800	Enhancers	Primary B cells from peripheral blood	blood
22	chr11:101424000-101424800	Flanking Active TSS	GM12878-XiMat	blood
23	chr11:101424000-101425000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr11:101424200-101424400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr11:101424200-101424400	Enhancers	Colon Smooth Muscle	Colon
26	chr11:101424200-101425800	Enhancers	Fetal Heart	heart
27	chr11:101424400-101424800	Flanking Active TSS	Colon Smooth Muscle	Colon
28	chr11:101424400-101437200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:101424600-101425800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr11:101424800-101425400	Enhancers	GM12878-XiMat	blood
31	chr11:101424800-101426200	Enhancers	Colon Smooth Muscle	Colon
32	chr11:101425600-101426400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:101425600-101426800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr11:101425800-101426200	Enhancers	Ovary	ovary
35	chr11:101426200-101429200	Weak transcription	Ovary	ovary
36	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:101426800-101431000	Weak transcription	NHDF-Ad	bronchial
38	chr11:101427400-101433600	Weak transcription	NHLF	lung
39	chr11:101429200-101429600	Enhancers	Ovary	ovary
40	chr11:101429600-101437400	Weak transcription	Ovary	ovary
41	chr11:101430800-101431400	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr11:101431000-101431800	Enhancers	NHDF-Ad	bronchial
43	chr11:101431400-101437400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:101431800-101433400	Weak transcription	NHDF-Ad	bronchial
45	chr11:101433400-101434800	Enhancers	NHDF-Ad	bronchial
46	chr11:101433600-101434600	Enhancers	NHLF	lung
47	chr11:101434000-101434600	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr11:101434600-101438000	Weak transcription	NHLF	lung
49	chr11:101434800-101436600	Weak transcription	NHDF-Ad	bronchial
50	chr11:101435800-101436000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links