Variant report

Variant	nsv556200
Chromosome Location	chr11:104268265-104274842
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:104266914..104269126-chr11:104273371..104275072,3	K562	blood:
2	chr11:104266914..104269126-chr11:104273371..104275072,3	K562	blood:
3	chr11:104258415..104260627-chr11:104273421..104275003,2	K562	blood:

Extended variants
information (count: 169 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:169 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11602131	chr11:104268265-104268266	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs368494056	chr11:104268295-104268296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs114591178	chr11:104268324-104268325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs192573541	chr11:104268396-104268397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs375567447	chr11:104268531-104268532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs542149554	chr11:104268562-104268563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs7933741	chr11:104268565-104268566	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs142567257	chr11:104268683-104268684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs114411791	chr11:104268717-104268718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs145991809	chr11:104268718-104268719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs533269610	chr11:104268723-104268724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs558417414	chr11:104268748-104268749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs550107119	chr11:104268799-104268800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs12417906	chr11:104268822-104268823	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs529332990	chr11:104268913-104268914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs149387068	chr11:104268933-104268934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs565674532	chr11:104268976-104268977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs534478190	chr11:104269084-104269085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs551185251	chr11:104269085-104269086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs115508498	chr11:104269090-104269091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs144729371	chr11:104269164-104269165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs148517951	chr11:104269172-104269173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs12416817	chr11:104269211-104269212	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs10895676	chr11:104269350-104269351	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs556061482	chr11:104269411-104269412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs572797187	chr11:104269464-104269465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs541590131	chr11:104269493-104269494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs184519995	chr11:104269545-104269546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs114496211	chr11:104269590-104269591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs200721159	chr11:104269631-104269632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs578153289	chr11:104269656-104269657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs543545688	chr11:104269706-104269707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs563831088	chr11:104269898-104269899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs529259018	chr11:104269944-104269945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs376702874	chr11:104270045-104270046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs534713876	chr11:104270060-104270061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs189305202	chr11:104270096-104270097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs12270862	chr11:104270109-104270110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201831350	chr11:104270119-104270120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs551121266	chr11:104270127-104270128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs142751511	chr11:104270182-104270183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs7928461	chr11:104270209-104270210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs530781140	chr11:104270221-104270222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs550383608	chr11:104270226-104270227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs192977930	chr11:104270228-104270229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs140993138	chr11:104270265-104270266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs553005832	chr11:104270267-104270268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs7941445	chr11:104270318-104270319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs566336017	chr11:104270323-104270324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs375412277	chr11:104270324-104270325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Melanoma	17363583	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Obesity	19966786	CNVD
Tetralogy of Fallot	22912587	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104267400-104271600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:104267600-104273200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:104267600-104273400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:104267800-104273200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:104267800-104273200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:104267800-104273200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:104271600-104272000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:104272000-104273400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:104272200-104273600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr11:104273200-104273400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:104273200-104273600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:104273200-104274000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr11:104273200-104276000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:104273400-104273600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:104273400-104273600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr11:104273400-104273600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:104273400-104273800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr11:104273400-104274000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr11:104273400-104274200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr11:104273400-104274400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:104273400-104274400	Enhancers	Stomach Mucosa	stomach
22	chr11:104273400-104275000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:104273600-104273800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr11:104273600-104273800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr11:104273600-104274000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:104273600-104274000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr11:104273600-104274000	Enhancers	NH-A	brain
28	chr11:104273600-104274200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:104273600-104274200	Enhancers	H9 Cell Line	embryonic stem cell
30	chr11:104273600-104274200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:104273600-104274200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:104273600-104275200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:104273800-104274000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr11:104273800-104274200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:104273800-104274200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr11:104273800-104274400	Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr11:104273800-104275000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr11:104273800-104275200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr11:104273800-104275200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:104273800-104276000	Enhancers	Fetal Heart	heart
41	chr11:104273800-104276800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr11:104274000-104274200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr11:104274000-104275000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:104274000-104276000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:104274000-104276200	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr11:104274000-104276400	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr11:104274000-104276800	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr11:104274200-104274600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr11:104274200-104275200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:104274200-104275200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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