Variant report

Variant	nsv556231
Chromosome Location	chr11:106737224-106815963
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:106770027..106773007-chr11:106773541..106775762,2	K562	blood:
2	chr11:106767415..106770075-chr11:106776264..106779232,2	K562	blood:
3	chr11:106729646..106731875-chr11:106736556..106738444,2	MCF-7	breast:
4	chr11:106767415..106770075-chr11:106776264..106779232,2	K562	blood:
5	chr11:106751125..106753536-chr11:106754192..106756756,2	K562	blood:
6	chr11:106770027..106773007-chr11:106773541..106775762,2	K562	blood:
7	chr11:106751125..106753536-chr11:106754192..106756756,2	K562	blood:

No data

Extended variants
information (count: 1675 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:1675 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs75191400	chr11:106741400-106741401	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs55670820	chr11:106741419-106741420	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs201973037	chr11:106741470-106741471	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs547048699	chr11:106741524-106741525	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs561818268	chr11:106741537-106741538	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs56907885	chr11:106741553-106741554	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs540936658	chr11:106741557-106741558	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs562430996	chr11:106741565-106741566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs59418840	chr11:106741569-106741570	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs551677196	chr11:106741608-106741609	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs112528279	chr11:106741632-106741633	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs562319172	chr11:106741647-106741648	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs118003558	chr11:106741668-106741669	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs71488231	chr11:106741681-106741682	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs116866255	chr11:106741717-106741718	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs36019157	chr11:106741735-106741736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs567760503	chr11:106741736-106741737	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs537920711	chr11:106741752-106741753	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs193148922	chr11:106741756-106741757	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs57639369	chr11:106741790-106741791	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs200420946	chr11:106741799-106741800	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs398045539	chr11:106741801-106741802	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs370829550	chr11:106741900-106741901	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs571286302	chr11:106741908-106741909	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs538982674	chr11:106741931-106741932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs554036700	chr11:106741988-106741989	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs79497732	chr11:106741989-106741990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs150095810	chr11:106742005-106742006	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs554824605	chr11:106742057-106742058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs538899746	chr11:106742075-106742076	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs11211955	chr11:106742170-106742171	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs572222748	chr11:106742186-106742187	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs543941499	chr11:106742215-106742216	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs556220861	chr11:106742225-106742226	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs376918681	chr11:106742242-106742243	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs138438509	chr11:106742283-106742284	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs545370315	chr11:106742290-106742291	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs560466933	chr11:106742304-106742305	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs75155312	chr11:106742324-106742325	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs572357173	chr11:106742355-106742356	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs542826049	chr11:106742360-106742361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs534818538	chr11:106742387-106742388	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs560891150	chr11:106742408-106742409	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs531861083	chr11:106742433-106742434	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs549847874	chr11:106742464-106742465	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs149276155	chr11:106742537-106742538	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs7109075	chr11:106742577-106742578	Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs547340051	chr11:106742649-106742650	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs533694632	chr11:106742655-106742656	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs536511389	chr11:106742673-106742674	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106741400-106742400	Enhancers	Fetal Heart	heart
2	chr11:106742400-106742800	Flanking Active TSS	Fetal Heart	heart
3	chr11:106742800-106743400	Enhancers	Fetal Heart	heart
4	chr11:106743400-106745800	Weak transcription	Fetal Heart	heart
5	chr11:106745600-106746200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:106745800-106746000	Enhancers	Fetal Lung	lung
7	chr11:106745800-106746400	Enhancers	Fetal Heart	heart
8	chr11:106746000-106752800	Weak transcription	Fetal Lung	lung
9	chr11:106750600-106751200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:106750600-106751200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:106750800-106751200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:106750800-106751200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:106750800-106751200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:106750800-106751400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:106750800-106751400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:106750800-106751400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr11:106750800-106751400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:106764400-106765000	Enhancers	Fetal Heart	heart
19	chr11:106774000-106776800	Enhancers	Fetal Heart	heart
20	chr11:106783600-106783800	Enhancers	Fetal Lung	lung
21	chr11:106783800-106785800	Weak transcription	Fetal Lung	lung
22	chr11:106784000-106784200	Enhancers	Brain Anterior Caudate	brain
23	chr11:106784000-106784400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:106784000-106784400	Enhancers	Pancreas	Pancrea
25	chr11:106785800-106786200	ZNF genes & repeats	Fetal Lung	lung
26	chr11:106786200-106806800	Weak transcription	Fetal Lung	lung
27	chr11:106786600-106787200	Enhancers	Fetal Heart	heart
28	chr11:106792000-106792600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:106792000-106792800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:106792400-106793000	Enhancers	NHDF-Ad	bronchial
31	chr11:106792600-106795600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:106793000-106796400	Weak transcription	NHDF-Ad	bronchial
33	chr11:106795000-106810600	Weak transcription	Fetal Brain Male	brain
34	chr11:106795600-106797800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:106795800-106796800	Enhancers	Fetal Heart	heart
36	chr11:106796000-106797600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:106796400-106797200	Enhancers	NHDF-Ad	bronchial
38	chr11:106796400-106797200	Enhancers	NHLF	lung
39	chr11:106796600-106797600	Enhancers	NH-A	brain
40	chr11:106796800-106797200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:106797000-106797600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:106797200-106799200	Weak transcription	NHDF-Ad	bronchial
43	chr11:106799200-106799600	ZNF genes & repeats	NHDF-Ad	bronchial
44	chr11:106801400-106802600	Enhancers	Ovary	ovary
45	chr11:106805000-106805800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr11:106805200-106806000	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr11:106805200-106806000	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr11:106805200-106806200	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr11:106805200-106806400	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr11:106806800-106807000	Enhancers	Fetal Heart	heart

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