Variant report
Variant | nsv556237 |
---|---|
Chromosome Location | chr11:106785139-106795127 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs12282090 | chr11:106785139-106785140 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs536975618 | chr11:106785172-106785173 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs538922889 | chr11:106785179-106785180 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs576930639 | chr11:106785269-106785270 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs147510229 | chr11:106785319-106785320 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs558266911 | chr11:106785323-106785324 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs182533550 | chr11:106785348-106785349 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs35873232 | chr11:106785361-106785362 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs188000259 | chr11:106785405-106785406 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs144529169 | chr11:106785425-106785426 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs118093724 | chr11:106785440-106785441 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs10789551 | chr11:106785447-106785448 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
13 | rs575871721 | chr11:106785462-106785463 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs546199636 | chr11:106785464-106785465 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs564102659 | chr11:106785493-106785494 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs528473982 | chr11:106785510-106785511 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs112173007 | chr11:106785563-106785564 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs561839895 | chr11:106785575-106785576 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs376922200 | chr11:106785613-106785614 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs147280428 | chr11:106785615-106785616 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs147861259 | chr11:106785663-106785664 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs548345434 | chr11:106785690-106785691 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs112833820 | chr11:106785702-106785703 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs193010003 | chr11:106785706-106785707 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs537317928 | chr11:106785739-106785740 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs75764262 | chr11:106785785-106785786 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs141121993 | chr11:106785830-106785831 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
28 | rs555144215 | chr11:106785882-106785883 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
29 | rs374534678 | chr11:106785890-106785891 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
30 | rs111628949 | chr11:106785897-106785898 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
31 | rs185143025 | chr11:106785900-106785901 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
32 | rs188807675 | chr11:106785912-106785913 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
33 | rs78139100 | chr11:106785913-106785914 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
34 | rs35968189 | chr11:106785930-106785931 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
35 | rs367953032 | chr11:106785974-106785975 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
36 | rs372542933 | chr11:106785977-106785978 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
37 | rs558068818 | chr11:106785991-106785992 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
38 | rs557499644 | chr11:106786009-106786010 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
39 | rs146939995 | chr11:106786035-106786036 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
40 | rs546434545 | chr11:106786056-106786057 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
41 | rs558029697 | chr11:106786081-106786082 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
42 | rs566965662 | chr11:106786086-106786087 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
43 | rs137964681 | chr11:106786113-106786114 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
44 | rs376311713 | chr11:106786128-106786129 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
45 | rs368693765 | chr11:106786239-106786240 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs10458950 | chr11:106786273-106786274 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
47 | rs113193694 | chr11:106786303-106786304 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs7118277 | chr11:106786319-106786320 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
49 | rs563457543 | chr11:106786369-106786370 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs149064877 | chr11:106786374-106786375 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Medulloblastoma | 21979893 | CNVD |
Gastric cancer | 17908304 | CNVD |
Multiple myeloma | 20724749 | CNVD |
Wilms tumour | 21544195 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Cancer | 21637783 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Chronic lymphocytic leukemia | 21795749 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Neuroblastoma | 21484798 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Oral cancer | 21386901 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 20837533 | CNVD |
Breast cancer | 21264507 | CNVD |
Cervical cancer | 21063398 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Liposarcoma | 21253554 | CNVD |
Neuroblastoma | 18923524 | CNVD |
Neuroblastoma | 18664255 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Neuroblastoma | 17533364 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Cancer | 16751803 | CNVD |
Seminomas | 18059402 | CNVD |
Cervical cancer | 21062161 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Cancer | 22429812 | CNVD |
Breast cancer | 16608533 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Melanoma | 18172304 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Hepatocellular carcinoma | 16785998 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Breast cancer | 21858162 | CNVD |
Breast cancer | 21785460 | CNVD |
Breast cancer | 21958427 | CNVD |
Lung cancer | 18438408 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Breast cancer | 17133270 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Breast cancer | 17603634 | CNVD |
T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
Basal cell lymphoma | 16790693 | CNVD |
Chronic lymphocytic leukemia | 21670202 | CNVD |
Breast cancer | 21364760 | CNVD |
Ovarian clear cell carcinoma | 19293255 | CNVD |
Mental retardation | 19966786 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Intracranial aneurysm | 16715129 | CNVD |
Ovine squamous-cell carcinoma | 17599052 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Follicular lymphoma | 17170743 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Chronic lymphocytic leukemia | 17805327 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Breast cancer | 16397240 | CNVD |
Chronic lymphocytic leukemia | 18922857 | CNVD |
Neuroblastoma | 17327916 | CNVD |
Esophageal adenocarcinoma | 18519675 | CNVD |
Esophageal squamous carcinoma | 17470683 | CNVD |
Mantle cell lymphoma | 19029149 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Malignant melanoma | 17260012 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Prostate cancer | 16573809 | CNVD |
Prostate cancer | 18632612 | CNVD |
Obesity | 19966786 | CNVD |
Cancer | 20164919 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:106783800-106785800 | Weak transcription | Fetal Lung | lung |
2 | chr11:106785800-106786200 | ZNF genes & repeats | Fetal Lung | lung |
3 | chr11:106786200-106806800 | Weak transcription | Fetal Lung | lung |
4 | chr11:106786600-106787200 | Enhancers | Fetal Heart | heart |
5 | chr11:106792000-106792600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
6 | chr11:106792000-106792800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
7 | chr11:106792400-106793000 | Enhancers | NHDF-Ad | bronchial |
8 | chr11:106792600-106795600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
9 | chr11:106793000-106796400 | Weak transcription | NHDF-Ad | bronchial |
10 | chr11:106795000-106810600 | Weak transcription | Fetal Brain Male | brain |