Variant report

Variant	nsv556384
Chromosome Location	chr11:107651095-107672045
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:107641920..107642539-chr11:107651250..107651774,2	K562	blood:
2	chr11:107646046..107648383-chr11:107654593..107656210,2	MCF-7	breast:
3	chr11:107670081..107670628-chr11:107695151..107695710,2	K562	blood:
4	chr11:107663159..107665072-chr11:107667163..107669875,2	MCF-7	breast:
5	chr11:107636795..107638295-chr11:107651566..107653122,2	K562	blood:
6	chr11:107670116..107670647-chr11:107768751..107769447,2	MCF-7	breast:
7	chr11:107663159..107665072-chr11:107667163..107669875,2	MCF-7	breast:

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	SLC35F2	hsa-miR-155-5p	chr11:107662756-107662777

Extended variants
information (count: 991 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:991 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs621334	chr11:107651095-107651096	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs138610614	chr11:107651104-107651105	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs531151397	chr11:107651128-107651129	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs577372740	chr11:107651170-107651171	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs539404712	chr11:107651181-107651182	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs541692668	chr11:107651186-107651187	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs559870352	chr11:107651250-107651251	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs575014008	chr11:107651269-107651270	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs202097920	chr11:107651277-107651278	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs112536280	chr11:107651278-107651279	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs568495418	chr11:107651313-107651314	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs188312393	chr11:107651347-107651348	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs2442682	chr11:107651356-107651357	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs531464331	chr11:107651421-107651422	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs199628529	chr11:107651451-107651452	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs550050181	chr11:107651471-107651472	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs565078015	chr11:107651474-107651475	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs61906443	chr11:107651504-107651505	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs186356573	chr11:107651526-107651527	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs35883026	chr11:107651539-107651540	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs73544904	chr11:107651552-107651553	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs207472324	chr11:107651559-107651560	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs72999526	chr11:107651601-107651602	Enhancers Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs1680249	chr11:107651609-107651610	Enhancers Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs555567822	chr11:107651683-107651684	Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs575428735	chr11:107651720-107651721	Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs75868833	chr11:107651721-107651722	Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs537300100	chr11:107651730-107651731	Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs559200915	chr11:107651764-107651765	Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs142706070	chr11:107651797-107651798	Enhancers Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs553568	chr11:107651826-107651827	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs535208856	chr11:107651835-107651836	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs553624728	chr11:107651839-107651840	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs574950993	chr11:107651844-107651845	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs542373441	chr11:107651874-107651875	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs563484999	chr11:107651903-107651904	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs543941907	chr11:107651905-107651906	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs563982837	chr11:107651918-107651919	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201455759	chr11:107651937-107651938	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs12280019	chr11:107651941-107651942	Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs191670840	chr11:107651951-107651952	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs183501508	chr11:107651952-107651953	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs532303574	chr11:107651992-107651993	Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs372151561	chr11:107652047-107652048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs12798509	chr11:107652055-107652056	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs572667072	chr11:107652065-107652066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs559140109	chr11:107652079-107652080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs11212368	chr11:107652122-107652123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs4753816	chr11:107652125-107652126	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs2851458	chr11:107652174-107652175	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD
Renal cell carcinoma	21668985	CNVD
Cancer	20164920	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	17440070	CNVD

Chromatin state (count:246 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107648400-107656000	Weak transcription	GM12878-XiMat	blood
2	chr11:107650400-107651400	Weak transcription	Fetal Lung	lung
3	chr11:107650600-107651200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:107650600-107651200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:107651000-107651800	Enhancers	Fetal Kidney	kidney
6	chr11:107651400-107651600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr11:107651400-107651800	Enhancers	Fetal Lung	lung
8	chr11:107651600-107652000	Active TSS	A549	lung
9	chr11:107652000-107665000	Weak transcription	A549	lung
10	chr11:107653600-107654600	Enhancers	Osteobl	bone
11	chr11:107653800-107654000	Enhancers	NH-A	brain
12	chr11:107654000-107676800	Weak transcription	NH-A	brain
13	chr11:107654600-107655800	Weak transcription	Osteobl	bone
14	chr11:107655400-107657000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:107655400-107662800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:107655800-107656600	Enhancers	Osteobl	bone
17	chr11:107655800-107657000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:107656000-107656200	Enhancers	GM12878-XiMat	blood
19	chr11:107656200-107656400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:107656200-107656600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr11:107656200-107656800	Enhancers	K562	blood
22	chr11:107656200-107662200	Weak transcription	GM12878-XiMat	blood
23	chr11:107656400-107656600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:107656400-107656600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr11:107656400-107657800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:107656600-107658000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:107656600-107663000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:107656600-107673400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:107656600-107679800	Weak transcription	Osteobl	bone
30	chr11:107656800-107657000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:107656800-107673800	Weak transcription	K562	blood
32	chr11:107657000-107662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:107657000-107662200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:107657000-107662600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:107657800-107658000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:107658000-107658800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:107658000-107659000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr11:107658200-107658600	Enhancers	Placenta Amnion	Placenta Amnion
39	chr11:107658200-107658800	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr11:107658200-107658800	Enhancers	NHEK	skin
41	chr11:107658200-107659200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr11:107658200-107659200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:107658200-107659400	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr11:107658400-107658600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr11:107658400-107658600	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr11:107658400-107659200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:107658600-107658800	Enhancers	H1 Cell Line	embryonic stem cell
48	chr11:107658600-107658800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:107658600-107662600	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr11:107658600-107665600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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